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Upgrade to latest API versions + code regen

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This commit is contained in:
Sebastian Thiel
2017-12-12 14:30:54 +01:00
parent dc30217711
commit 357a0e650e
776 changed files with 356718 additions and 104442 deletions
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4
gen/genomics1-cli/Cargo.toml
View File

@@ -4,7 +4,7 @@
[package]
name = "google-genomics1-cli"
version = "1.0.6+20170925"
version = "1.0.6+20171207"
authors = ["Sebastian Thiel <byronimo@gmail.com>"]
description = "A complete library to interact with genomics (protocol v1)"
repository = "https://github.com/Byron/google-apis-rs/tree/master/gen/genomics1-cli"
@@ -37,4 +37,4 @@ clap = "^2.0"
[dependencies.google-genomics1]
path = "../genomics1"
version = "1.0.6+20170925"
version = "1.0.6+20171207"

2
gen/genomics1-cli/README.md
View File

@@ -25,7 +25,7 @@ Find the source code [on github](https://github.com/Byron/google-apis-rs/tree/ma
# Usage
This documentation was generated from the *genomics* API at revision *20170925*. The CLI is at version *1.0.6*.
This documentation was generated from the *genomics* API at revision *20171207*. The CLI is at version *1.0.6*.
```bash
genomics1 [options]

2
gen/genomics1-cli/mkdocs.yml
View File

@@ -1,4 +1,4 @@
site_name: genomics v1.0.6+20170925
site_name: genomics v1.0.6+20171207
site_url: http://byron.github.io/google-apis-rs/google-genomics1-cli
site_description: A complete library to interact with genomics (protocol v1)

56
gen/genomics1-cli/src/main.rs
View File

@@ -157,7 +157,9 @@ impl<'n> Engine<'n> {
"reference-id" => Some(("referenceId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"end" => Some(("end", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"name" => Some(("name", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"type" => Some(("type", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.coding-sequence.start" => Some(("transcript.codingSequence.start", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.coding-sequence.end" => Some(("transcript.codingSequence.end", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.gene-id" => Some(("transcript.geneId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"variant.effect" => Some(("variant.effect", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"variant.transcript-ids" => Some(("variant.transcriptIds", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"variant.alternate-bases" => Some(("variant.alternateBases", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
@@ -168,9 +170,7 @@ impl<'n> Engine<'n> {
"annotation-set-id" => Some(("annotationSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-name" => Some(("referenceName", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reverse-strand" => Some(("reverseStrand", JsonTypeInfo { jtype: JsonType::Boolean, ctype: ComplexType::Pod })),
"transcript.coding-sequence.start" => Some(("transcript.codingSequence.start", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.coding-sequence.end" => Some(("transcript.codingSequence.end", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.gene-id" => Some(("transcript.geneId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"type" => Some(("type", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"id" => Some(("id", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
let suggestion = FieldCursor::did_you_mean(key, &vec!["alternate-bases", "annotation-set-id", "clinical-significance", "coding-sequence", "effect", "end", "gene-id", "id", "name", "reference-id", "reference-name", "reverse-strand", "start", "transcript", "transcript-ids", "type", "variant"]);
@@ -363,9 +363,9 @@ impl<'n> Engine<'n> {
"reference-id" => Some(("referenceId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"end" => Some(("end", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"page-size" => Some(("pageSize", JsonTypeInfo { jtype: JsonType::Int, ctype: ComplexType::Pod })),
"start" => Some(("start", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"annotation-set-ids" => Some(("annotationSetIds", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"page-token" => Some(("pageToken", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"annotation-set-ids" => Some(("annotationSetIds", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"start" => Some(("start", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-name" => Some(("referenceName", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
let suggestion = FieldCursor::did_you_mean(key, &vec!["annotation-set-ids", "end", "page-size", "page-token", "reference-id", "reference-name", "start"]);
@@ -454,7 +454,9 @@ impl<'n> Engine<'n> {
"reference-id" => Some(("referenceId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"end" => Some(("end", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"name" => Some(("name", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"type" => Some(("type", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.coding-sequence.start" => Some(("transcript.codingSequence.start", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.coding-sequence.end" => Some(("transcript.codingSequence.end", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.gene-id" => Some(("transcript.geneId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"variant.effect" => Some(("variant.effect", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"variant.transcript-ids" => Some(("variant.transcriptIds", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"variant.alternate-bases" => Some(("variant.alternateBases", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
@@ -465,9 +467,7 @@ impl<'n> Engine<'n> {
"annotation-set-id" => Some(("annotationSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-name" => Some(("referenceName", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reverse-strand" => Some(("reverseStrand", JsonTypeInfo { jtype: JsonType::Boolean, ctype: ComplexType::Pod })),
"transcript.coding-sequence.start" => Some(("transcript.codingSequence.start", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.coding-sequence.end" => Some(("transcript.codingSequence.end", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"transcript.gene-id" => Some(("transcript.geneId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"type" => Some(("type", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"id" => Some(("id", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
let suggestion = FieldCursor::did_you_mean(key, &vec!["alternate-bases", "annotation-set-id", "clinical-significance", "coding-sequence", "effect", "end", "gene-id", "id", "name", "reference-id", "reference-name", "reverse-strand", "start", "transcript", "transcript-ids", "type", "variant"]);
@@ -753,9 +753,9 @@ impl<'n> Engine<'n> {
match &temp_cursor.to_string()[..] {
"name" => Some(("name", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"page-size" => Some(("pageSize", JsonTypeInfo { jtype: JsonType::Int, ctype: ComplexType::Pod })),
"dataset-ids" => Some(("datasetIds", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"page-token" => Some(("pageToken", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-set-id" => Some(("referenceSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"page-token" => Some(("pageToken", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"dataset-ids" => Some(("datasetIds", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"types" => Some(("types", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
_ => {
let suggestion = FieldCursor::did_you_mean(key, &vec!["dataset-ids", "name", "page-size", "page-token", "reference-set-id", "types"]);
@@ -2315,9 +2315,9 @@ impl<'n> Engine<'n> {
let type_info: Option<(&'static str, JsonTypeInfo)> =
match &temp_cursor.to_string()[..] {
"export-uri" => Some(("exportUri", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-names" => Some(("referenceNames", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"project-id" => Some(("projectId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-names" => Some(("referenceNames", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"export-uri" => Some(("exportUri", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
let suggestion = FieldCursor::did_you_mean(key, &vec!["export-uri", "project-id", "reference-names"]);
err.issues.push(CLIError::Field(FieldError::Unknown(temp_cursor.to_string(), suggestion, value.map(|v| v.to_string()))));
@@ -2454,8 +2454,8 @@ impl<'n> Engine<'n> {
let type_info: Option<(&'static str, JsonTypeInfo)> =
match &temp_cursor.to_string()[..] {
"reference-set-id" => Some(("referenceSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"source-uris" => Some(("sourceUris", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"reference-set-id" => Some(("referenceSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"partition-strategy" => Some(("partitionStrategy", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"dataset-id" => Some(("datasetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
@@ -3164,14 +3164,14 @@ impl<'n> Engine<'n> {
"variant-set-id" => Some(("variantSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"end" => Some(("end", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"created" => Some(("created", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"id" => Some(("id", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-bases" => Some(("referenceBases", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"filter" => Some(("filter", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"start" => Some(("start", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"names" => Some(("names", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"alternate-bases" => Some(("alternateBases", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"reference-name" => Some(("referenceName", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"quality" => Some(("quality", JsonTypeInfo { jtype: JsonType::Float, ctype: ComplexType::Pod })),
"reference-bases" => Some(("referenceBases", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"id" => Some(("id", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
let suggestion = FieldCursor::did_you_mean(key, &vec!["alternate-bases", "created", "end", "filter", "id", "names", "quality", "reference-bases", "reference-name", "start", "variant-set-id"]);
err.issues.push(CLIError::Field(FieldError::Unknown(temp_cursor.to_string(), suggestion, value.map(|v| v.to_string()))));
@@ -3361,10 +3361,10 @@ impl<'n> Engine<'n> {
let type_info: Option<(&'static str, JsonTypeInfo)> =
match &temp_cursor.to_string()[..] {
"variant-set-id" => Some(("variantSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"normalize-reference-names" => Some(("normalizeReferenceNames", JsonTypeInfo { jtype: JsonType::Boolean, ctype: ComplexType::Pod })),
"format" => Some(("format", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"source-uris" => Some(("sourceUris", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"info-merge-config" => Some(("infoMergeConfig", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Map })),
"format" => Some(("format", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"normalize-reference-names" => Some(("normalizeReferenceNames", JsonTypeInfo { jtype: JsonType::Boolean, ctype: ComplexType::Pod })),
_ => {
let suggestion = FieldCursor::did_you_mean(key, &vec!["format", "info-merge-config", "normalize-reference-names", "source-uris", "variant-set-id"]);
err.issues.push(CLIError::Field(FieldError::Unknown(temp_cursor.to_string(), suggestion, value.map(|v| v.to_string()))));
@@ -3538,14 +3538,14 @@ impl<'n> Engine<'n> {
"variant-set-id" => Some(("variantSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"end" => Some(("end", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"created" => Some(("created", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"id" => Some(("id", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-bases" => Some(("referenceBases", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"filter" => Some(("filter", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"start" => Some(("start", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"names" => Some(("names", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"alternate-bases" => Some(("alternateBases", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"reference-name" => Some(("referenceName", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"quality" => Some(("quality", JsonTypeInfo { jtype: JsonType::Float, ctype: ComplexType::Pod })),
"reference-bases" => Some(("referenceBases", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"id" => Some(("id", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
let suggestion = FieldCursor::did_you_mean(key, &vec!["alternate-bases", "created", "end", "filter", "id", "names", "quality", "reference-bases", "reference-name", "start", "variant-set-id"]);
err.issues.push(CLIError::Field(FieldError::Unknown(temp_cursor.to_string(), suggestion, value.map(|v| v.to_string()))));
@@ -3727,9 +3727,9 @@ impl<'n> Engine<'n> {
let type_info: Option<(&'static str, JsonTypeInfo)> =
match &temp_cursor.to_string()[..] {
"name" => Some(("name", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-set-id" => Some(("referenceSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"description" => Some(("description", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-set-id" => Some(("referenceSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"name" => Some(("name", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"dataset-id" => Some(("datasetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"id" => Some(("id", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
@@ -3869,10 +3869,10 @@ impl<'n> Engine<'n> {
let type_info: Option<(&'static str, JsonTypeInfo)> =
match &temp_cursor.to_string()[..] {
"bigquery-dataset" => Some(("bigqueryDataset", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"format" => Some(("format", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"bigquery-table" => Some(("bigqueryTable", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"call-set-ids" => Some(("callSetIds", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Vec })),
"project-id" => Some(("projectId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"bigquery-table" => Some(("bigqueryTable", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"format" => Some(("format", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
let suggestion = FieldCursor::did_you_mean(key, &vec!["bigquery-dataset", "bigquery-table", "call-set-ids", "format", "project-id"]);
err.issues.push(CLIError::Field(FieldError::Unknown(temp_cursor.to_string(), suggestion, value.map(|v| v.to_string()))));
@@ -4009,9 +4009,9 @@ impl<'n> Engine<'n> {
let type_info: Option<(&'static str, JsonTypeInfo)> =
match &temp_cursor.to_string()[..] {
"name" => Some(("name", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-set-id" => Some(("referenceSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"description" => Some(("description", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"reference-set-id" => Some(("referenceSetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"name" => Some(("name", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"dataset-id" => Some(("datasetId", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
"id" => Some(("id", JsonTypeInfo { jtype: JsonType::String, ctype: ComplexType::Pod })),
_ => {
@@ -6241,7 +6241,7 @@ fn main() {
let mut app = App::new("genomics1")
.author("Sebastian Thiel <byronimo@gmail.com>")
.version("1.0.6+20170925")
.version("1.0.6+20171207")
.about("Upload, process, query, and search Genomics data in the cloud.")
.after_help("All documentation details can be found at http://byron.github.io/google-apis-rs/google_genomics1_cli")
.arg(Arg::with_name("url")