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// DO NOT EDIT !
// This file was generated automatically from 'src/mako/api/lib.rs.mako'
// DO NOT EDIT !
//! This documentation was generated from *genomics* crate version *1.0.8+20181010*, where *20181010* is the exact revision of the *genomics:v1* schema built by the [mako](http://www.makotemplates.org/) code generator *v1.0.8*.
//!
//! Everything else about the *genomics* *v1* API can be found at the
//! [official documentation site](https://cloud.google.com/genomics).
//! The original source code is [on github](https://github.com/Byron/google-apis-rs/tree/master/gen/genomics1).
//! # Features
//!
//! Handle the following *Resources* with ease from the central [hub](struct.Genomics.html) ...
//!
//! * [annotations](struct.Annotation.html)
//! * [*batch create*](struct.AnnotationBatchCreateCall.html), [*create*](struct.AnnotationCreateCall.html), [*delete*](struct.AnnotationDeleteCall.html), [*get*](struct.AnnotationGetCall.html), [*search*](struct.AnnotationSearchCall.html) and [*update*](struct.AnnotationUpdateCall.html)
//! * annotationsets
//! * [*create*](struct.AnnotationsetCreateCall.html), [*delete*](struct.AnnotationsetDeleteCall.html), [*get*](struct.AnnotationsetGetCall.html), [*search*](struct.AnnotationsetSearchCall.html) and [*update*](struct.AnnotationsetUpdateCall.html)
//! * callsets
//! * [*create*](struct.CallsetCreateCall.html), [*delete*](struct.CallsetDeleteCall.html), [*get*](struct.CallsetGetCall.html), [*patch*](struct.CallsetPatchCall.html) and [*search*](struct.CallsetSearchCall.html)
//! * [datasets](struct.Dataset.html)
//! * [*create*](struct.DatasetCreateCall.html), [*delete*](struct.DatasetDeleteCall.html), [*get*](struct.DatasetGetCall.html), [*get iam policy*](struct.DatasetGetIamPolicyCall.html), [*list*](struct.DatasetListCall.html), [*patch*](struct.DatasetPatchCall.html), [*set iam policy*](struct.DatasetSetIamPolicyCall.html), [*test iam permissions*](struct.DatasetTestIamPermissionCall.html) and [*undelete*](struct.DatasetUndeleteCall.html)
//! * [operations](struct.Operation.html)
//! * [*cancel*](struct.OperationCancelCall.html), [*get*](struct.OperationGetCall.html) and [*list*](struct.OperationListCall.html)
//! * readgroupsets
//! * [*coveragebuckets list*](struct.ReadgroupsetCoveragebucketListCall.html), [*delete*](struct.ReadgroupsetDeleteCall.html), [*export*](struct.ReadgroupsetExportCall.html), [*get*](struct.ReadgroupsetGetCall.html), [*import*](struct.ReadgroupsetImportCall.html), [*patch*](struct.ReadgroupsetPatchCall.html) and [*search*](struct.ReadgroupsetSearchCall.html)
//! * [reads](struct.Read.html)
//! * [*search*](struct.ReadSearchCall.html)
//! * [references](struct.Reference.html)
//! * [*bases list*](struct.ReferenceBaseListCall.html), [*get*](struct.ReferenceGetCall.html) and [*search*](struct.ReferenceSearchCall.html)
//! * referencesets
//! * [*get*](struct.ReferencesetGetCall.html) and [*search*](struct.ReferencesetSearchCall.html)
//! * [variants](struct.Variant.html)
//! * [*create*](struct.VariantCreateCall.html), [*delete*](struct.VariantDeleteCall.html), [*get*](struct.VariantGetCall.html), [*import*](struct.VariantImportCall.html), [*merge*](struct.VariantMergeCall.html), [*patch*](struct.VariantPatchCall.html) and [*search*](struct.VariantSearchCall.html)
//! * variantsets
//! * [*create*](struct.VariantsetCreateCall.html), [*delete*](struct.VariantsetDeleteCall.html), [*export*](struct.VariantsetExportCall.html), [*get*](struct.VariantsetGetCall.html), [*patch*](struct.VariantsetPatchCall.html) and [*search*](struct.VariantsetSearchCall.html)
//!
//!
//!
//!
//! Not what you are looking for ? Find all other Google APIs in their Rust [documentation index](http://byron.github.io/google-apis-rs).
//!
//! # Structure of this Library
//!
//! The API is structured into the following primary items:
//!
//! * **[Hub](struct.Genomics.html)**
//! * a central object to maintain state and allow accessing all *Activities*
//! * creates [*Method Builders*](trait.MethodsBuilder.html) which in turn
//! allow access to individual [*Call Builders*](trait.CallBuilder.html)
//! * **[Resources](trait.Resource.html)**
//! * primary types that you can apply *Activities* to
//! * a collection of properties and *Parts*
//! * **[Parts](trait.Part.html)**
//! * a collection of properties
//! * never directly used in *Activities*
//! * **[Activities](trait.CallBuilder.html)**
//! * operations to apply to *Resources*
//!
//! All *structures* are marked with applicable traits to further categorize them and ease browsing.
//!
//! Generally speaking, you can invoke *Activities* like this:
//!
//! ```Rust,ignore
//! let r = hub.resource().activity(...).doit()
//! ```
//!
//! Or specifically ...
//!
//! ```ignore
//! let r = hub.datasets().set_iam_policy(...).doit()
//! let r = hub.datasets().delete(...).doit()
//! let r = hub.datasets().get_iam_policy(...).doit()
//! let r = hub.datasets().test_iam_permissions(...).doit()
//! let r = hub.datasets().get(...).doit()
//! let r = hub.datasets().undelete(...).doit()
//! let r = hub.datasets().create(...).doit()
//! let r = hub.datasets().patch(...).doit()
//! let r = hub.datasets().list(...).doit()
//! ```
//!
//! The `resource()` and `activity(...)` calls create [builders][builder-pattern]. The second one dealing with `Activities`
//! supports various methods to configure the impending operation (not shown here). It is made such that all required arguments have to be
//! specified right away (i.e. `(...)`), whereas all optional ones can be [build up][builder-pattern] as desired.
//! The `doit()` method performs the actual communication with the server and returns the respective result.
//!
//! # Usage
//!
//! ## Setting up your Project
//!
//! To use this library, you would put the following lines into your `Cargo.toml` file:
//!
//! ```toml
//! [dependencies]
//! google-genomics1 = "*"
//! # This project intentionally uses an old version of Hyper. See
//! # https://github.com/Byron/google-apis-rs/issues/173 for more
//! # information.
//! hyper = "^0.10"
//! hyper-rustls = "^0.6"
//! serde = "^1.0"
//! serde_json = "^1.0"
//! yup-oauth2 = "^1.0"
//! ```
//!
//! ## A complete example
//!
//! ```test_harness,no_run
//! extern crate hyper;
//! extern crate hyper_rustls;
//! extern crate yup_oauth2 as oauth2;
//! extern crate google_genomics1 as genomics1;
//! use genomics1::Dataset;
//! use genomics1::{Result, Error};
//! # #[test] fn egal() {
//! use std::default::Default;
//! use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
//! use genomics1::Genomics;
//!
//! // Get an ApplicationSecret instance by some means. It contains the `client_id` and
//! // `client_secret`, among other things.
//! let secret: ApplicationSecret = Default::default();
//! // Instantiate the authenticator. It will choose a suitable authentication flow for you,
//! // unless you replace `None` with the desired Flow.
//! // Provide your own `AuthenticatorDelegate` to adjust the way it operates and get feedback about
//! // what's going on. You probably want to bring in your own `TokenStorage` to persist tokens and
//! // retrieve them from storage.
//! let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
//! hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
//! <MemoryStorage as Default>::default(), None);
//! let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
//! // As the method needs a request, you would usually fill it with the desired information
//! // into the respective structure. Some of the parts shown here might not be applicable !
//! // Values shown here are possibly random and not representative !
//! let mut req = Dataset::default();
//!
//! // You can configure optional parameters by calling the respective setters at will, and
//! // execute the final call using `doit()`.
//! // Values shown here are possibly random and not representative !
//! let result = hub.datasets().patch(req, "datasetId")
//! .update_mask("sed")
//! .doit();
//!
//! match result {
//! Err(e) => match e {
//! // The Error enum provides details about what exactly happened.
//! // You can also just use its `Debug`, `Display` or `Error` traits
//! Error::HttpError(_)
//! |Error::MissingAPIKey
//! |Error::MissingToken(_)
//! |Error::Cancelled
//! |Error::UploadSizeLimitExceeded(_, _)
//! |Error::Failure(_)
//! |Error::BadRequest(_)
//! |Error::FieldClash(_)
//! |Error::JsonDecodeError(_, _) => println!("{}", e),
//! },
//! Ok(res) => println!("Success: {:?}", res),
//! }
//! # }
//! ```
//! ## Handling Errors
//!
//! All errors produced by the system are provided either as [Result](enum.Result.html) enumeration as return value of
//! the doit() methods, or handed as possibly intermediate results to either the
//! [Hub Delegate](trait.Delegate.html), or the [Authenticator Delegate](https://docs.rs/yup-oauth2/*/yup_oauth2/trait.AuthenticatorDelegate.html).
//!
//! When delegates handle errors or intermediate values, they may have a chance to instruct the system to retry. This
//! makes the system potentially resilient to all kinds of errors.
//!
//! ## Uploads and Downloads
//! If a method supports downloads, the response body, which is part of the [Result](enum.Result.html), should be
//! read by you to obtain the media.
//! If such a method also supports a [Response Result](trait.ResponseResult.html), it will return that by default.
//! You can see it as meta-data for the actual media. To trigger a media download, you will have to set up the builder by making
//! this call: `.param("alt", "media")`.
//!
//! Methods supporting uploads can do so using up to 2 different protocols:
//! *simple* and *resumable*. The distinctiveness of each is represented by customized
//! `doit(...)` methods, which are then named `upload(...)` and `upload_resumable(...)` respectively.
//!
//! ## Customization and Callbacks
//!
//! You may alter the way an `doit()` method is called by providing a [delegate](trait.Delegate.html) to the
//! [Method Builder](trait.CallBuilder.html) before making the final `doit()` call.
//! Respective methods will be called to provide progress information, as well as determine whether the system should
//! retry on failure.
//!
//! The [delegate trait](trait.Delegate.html) is default-implemented, allowing you to customize it with minimal effort.
//!
//! ## Optional Parts in Server-Requests
//!
//! All structures provided by this library are made to be [enocodable](trait.RequestValue.html) and
//! [decodable](trait.ResponseResult.html) via *json*. Optionals are used to indicate that partial requests are responses
//! are valid.
//! Most optionals are are considered [Parts](trait.Part.html) which are identifiable by name, which will be sent to
//! the server to indicate either the set parts of the request or the desired parts in the response.
//!
//! ## Builder Arguments
//!
//! Using [method builders](trait.CallBuilder.html), you are able to prepare an action call by repeatedly calling it's methods.
//! These will always take a single argument, for which the following statements are true.
//!
//! * [PODs][wiki-pod] are handed by copy
//! * strings are passed as `&str`
//! * [request values](trait.RequestValue.html) are moved
//!
//! Arguments will always be copied or cloned into the builder, to make them independent of their original life times.
//!
//! [wiki-pod]: http://en.wikipedia.org/wiki/Plain_old_data_structure
//! [builder-pattern]: http://en.wikipedia.org/wiki/Builder_pattern
//! [google-go-api]: https://github.com/google/google-api-go-client
//!
//!
// Unused attributes happen thanks to defined, but unused structures
// We don't warn about this, as depending on the API, some data structures or facilities are never used.
// Instead of pre-determining this, we just disable the lint. It's manually tuned to not have any
// unused imports in fully featured APIs. Same with unused_mut ... .
#![allow(unused_imports, unused_mut, dead_code)]
// DO NOT EDIT !
// This file was generated automatically from 'src/mako/api/lib.rs.mako'
// DO NOT EDIT !
#[macro_use]
extern crate serde_derive;
extern crate hyper;
extern crate serde;
extern crate serde_json;
extern crate yup_oauth2 as oauth2;
extern crate mime;
extern crate url;
mod cmn;
use std::collections::HashMap;
use std::cell::RefCell;
use std::borrow::BorrowMut;
use std::default::Default;
use std::collections::BTreeMap;
use serde_json as json;
use std::io;
use std::fs;
use std::mem;
use std::thread::sleep;
use std::time::Duration;
pub use cmn::{MultiPartReader, ToParts, MethodInfo, Result, Error, CallBuilder, Hub, ReadSeek, Part,
ResponseResult, RequestValue, NestedType, Delegate, DefaultDelegate, MethodsBuilder,
Resource, ErrorResponse, remove_json_null_values};
// ##############
// UTILITIES ###
// ############
/// Identifies the an OAuth2 authorization scope.
/// A scope is needed when requesting an
/// [authorization token](https://developers.google.com/youtube/v3/guides/authentication).
#[derive(PartialEq, Eq, Hash)]
pub enum Scope {
/// View and manage Genomics data
Full,
/// View Genomics data
Readonly,
/// View and manage your data across Google Cloud Platform services
CloudPlatform,
/// View and manage your data in Google BigQuery
Bigquery,
/// Manage your data in Google Cloud Storage
DevstorageReadWrite,
}
impl AsRef<str> for Scope {
fn as_ref(&self) -> &str {
match *self {
Scope::Full => "https://www.googleapis.com/auth/genomics",
Scope::Readonly => "https://www.googleapis.com/auth/genomics.readonly",
Scope::CloudPlatform => "https://www.googleapis.com/auth/cloud-platform",
Scope::Bigquery => "https://www.googleapis.com/auth/bigquery",
Scope::DevstorageReadWrite => "https://www.googleapis.com/auth/devstorage.read_write",
}
}
}
impl Default for Scope {
fn default() -> Scope {
Scope::Readonly
}
}
// ########
// HUB ###
// ######
/// Central instance to access all Genomics related resource activities
///
/// # Examples
///
/// Instantiate a new hub
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
/// use genomics1::Dataset;
/// use genomics1::{Result, Error};
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// // Get an ApplicationSecret instance by some means. It contains the `client_id` and
/// // `client_secret`, among other things.
/// let secret: ApplicationSecret = Default::default();
/// // Instantiate the authenticator. It will choose a suitable authentication flow for you,
/// // unless you replace `None` with the desired Flow.
/// // Provide your own `AuthenticatorDelegate` to adjust the way it operates and get feedback about
/// // what's going on. You probably want to bring in your own `TokenStorage` to persist tokens and
/// // retrieve them from storage.
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = Dataset::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().patch(req, "datasetId")
/// .update_mask("dolores")
/// .doit();
///
/// match result {
/// Err(e) => match e {
/// // The Error enum provides details about what exactly happened.
/// // You can also just use its `Debug`, `Display` or `Error` traits
/// Error::HttpError(_)
/// |Error::MissingAPIKey
/// |Error::MissingToken(_)
/// |Error::Cancelled
/// |Error::UploadSizeLimitExceeded(_, _)
/// |Error::Failure(_)
/// |Error::BadRequest(_)
/// |Error::FieldClash(_)
/// |Error::JsonDecodeError(_, _) => println!("{}", e),
/// },
/// Ok(res) => println!("Success: {:?}", res),
/// }
/// # }
/// ```
pub struct Genomics<C, A> {
client: RefCell<C>,
auth: RefCell<A>,
_user_agent: String,
_base_url: String,
_root_url: String,
}
impl<'a, C, A> Hub for Genomics<C, A> {}
impl<'a, C, A> Genomics<C, A>
where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
pub fn new(client: C, authenticator: A) -> Genomics<C, A> {
Genomics {
client: RefCell::new(client),
auth: RefCell::new(authenticator),
_user_agent: "google-api-rust-client/1.0.8".to_string(),
_base_url: "https://genomics.googleapis.com/".to_string(),
_root_url: "https://genomics.googleapis.com/".to_string(),
}
}
pub fn annotations(&'a self) -> AnnotationMethods<'a, C, A> {
AnnotationMethods { hub: &self }
}
pub fn annotationsets(&'a self) -> AnnotationsetMethods<'a, C, A> {
AnnotationsetMethods { hub: &self }
}
pub fn callsets(&'a self) -> CallsetMethods<'a, C, A> {
CallsetMethods { hub: &self }
}
pub fn datasets(&'a self) -> DatasetMethods<'a, C, A> {
DatasetMethods { hub: &self }
}
pub fn operations(&'a self) -> OperationMethods<'a, C, A> {
OperationMethods { hub: &self }
}
pub fn readgroupsets(&'a self) -> ReadgroupsetMethods<'a, C, A> {
ReadgroupsetMethods { hub: &self }
}
pub fn reads(&'a self) -> ReadMethods<'a, C, A> {
ReadMethods { hub: &self }
}
pub fn references(&'a self) -> ReferenceMethods<'a, C, A> {
ReferenceMethods { hub: &self }
}
pub fn referencesets(&'a self) -> ReferencesetMethods<'a, C, A> {
ReferencesetMethods { hub: &self }
}
pub fn variants(&'a self) -> VariantMethods<'a, C, A> {
VariantMethods { hub: &self }
}
pub fn variantsets(&'a self) -> VariantsetMethods<'a, C, A> {
VariantsetMethods { hub: &self }
}
/// Set the user-agent header field to use in all requests to the server.
/// It defaults to `google-api-rust-client/1.0.8`.
///
/// Returns the previously set user-agent.
pub fn user_agent(&mut self, agent_name: String) -> String {
mem::replace(&mut self._user_agent, agent_name)
}
/// Set the base url to use in all requests to the server.
/// It defaults to `https://genomics.googleapis.com/`.
///
/// Returns the previously set base url.
pub fn base_url(&mut self, new_base_url: String) -> String {
mem::replace(&mut self._base_url, new_base_url)
}
/// Set the root url to use in all requests to the server.
/// It defaults to `https://genomics.googleapis.com/`.
///
/// Returns the previously set root url.
pub fn root_url(&mut self, new_root_url: String) -> String {
mem::replace(&mut self._root_url, new_root_url)
}
}
// ############
// SCHEMAS ###
// ##########
/// There is no detailed description.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ClinicalCondition {
/// The set of external IDs for this condition.
#[serde(rename="externalIds")]
pub external_ids: Option<Vec<ExternalId>>,
/// The OMIM id for this condition.
/// Search for these IDs at http://omim.org/
#[serde(rename="omimId")]
pub omim_id: Option<String>,
/// The MedGen concept id associated with this gene.
/// Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
#[serde(rename="conceptId")]
pub concept_id: Option<String>,
/// A set of names for the condition.
pub names: Option<Vec<String>>,
}
impl Part for ClinicalCondition {}
/// The search variant sets request.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search variantsets](struct.VariantsetSearchCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchVariantSetsRequest {
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
#[serde(rename="pageToken")]
pub page_token: Option<String>,
/// Exactly one dataset ID must be provided here. Only variant sets which
/// belong to this dataset will be returned.
#[serde(rename="datasetIds")]
pub dataset_ids: Option<Vec<String>>,
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 1024.
#[serde(rename="pageSize")]
pub page_size: Option<i32>,
}
impl RequestValue for SearchVariantSetsRequest {}
/// The read group set export request.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [export readgroupsets](struct.ReadgroupsetExportCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ExportReadGroupSetRequest {
/// Required. The Google Cloud project ID that owns this
/// export. The caller must have WRITE access to this project.
#[serde(rename="projectId")]
pub project_id: Option<String>,
/// The reference names to export. If this is not specified, all reference
/// sequences, including unmapped reads, are exported.
/// Use `*` to export only unmapped reads.
#[serde(rename="referenceNames")]
pub reference_names: Option<Vec<String>>,
/// Required. A Google Cloud Storage URI for the exported BAM file.
/// The currently authenticated user must have write access to the new file.
/// An error will be returned if the URI already contains data.
#[serde(rename="exportUri")]
pub export_uri: Option<String>,
}
impl RequestValue for ExportReadGroupSetRequest {}
/// There is no detailed description.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Program {
/// The ID of the program run before this one.
#[serde(rename="prevProgramId")]
pub prev_program_id: Option<String>,
/// The command line used to run this program.
#[serde(rename="commandLine")]
pub command_line: Option<String>,
/// The version of the program run.
pub version: Option<String>,
/// The user specified locally unique ID of the program. Used along with
/// `prevProgramId` to define an ordering between programs.
pub id: Option<String>,
/// The display name of the program. This is typically the colloquial name of
/// the tool used, for example 'bwa' or 'picard'.
pub name: Option<String>,
}
impl Part for Program {}
/// There is no detailed description.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct VariantAnnotation {
/// Google annotation IDs of the transcripts affected by this variant. These
/// should be provided when the variant is created.
#[serde(rename="transcriptIds")]
pub transcript_ids: Option<Vec<String>>,
/// The alternate allele for this variant. If multiple alternate alleles
/// exist at this location, create a separate variant for each one, as they
/// may represent distinct conditions.
#[serde(rename="alternateBases")]
pub alternate_bases: Option<String>,
/// Describes the clinical significance of a variant.
/// It is adapted from the ClinVar controlled vocabulary for clinical
/// significance described at:
/// http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
#[serde(rename="clinicalSignificance")]
pub clinical_significance: Option<String>,
/// The set of conditions associated with this variant.
/// A condition describes the way a variant influences human health.
pub conditions: Option<Vec<ClinicalCondition>>,
/// Type has been adapted from ClinVar's list of variant types.
#[serde(rename="type")]
pub type_: Option<String>,
/// Effect of the variant on the coding sequence.
pub effect: Option<String>,
/// Google annotation ID of the gene affected by this variant. This should
/// be provided when the variant is created.
#[serde(rename="geneId")]
pub gene_id: Option<String>,
}
impl Part for VariantAnnotation {}
/// The variant data import request.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [import variants](struct.VariantImportCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ImportVariantsRequest {
/// Required. The variant set to which variant data should be imported.
#[serde(rename="variantSetId")]
pub variant_set_id: Option<String>,
/// Convert reference names to the canonical representation.
/// hg19 haploytypes (those reference names containing "_hap")
/// are not modified in any way.
/// All other reference names are modified according to the following rules:
/// The reference name is capitalized.
/// The "chr" prefix is dropped for all autosomes and sex chromsomes.
/// For example "chr17" becomes "17" and "chrX" becomes "X".
/// All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
#[serde(rename="normalizeReferenceNames")]
pub normalize_reference_names: Option<bool>,
/// A list of URIs referencing variant files in Google Cloud Storage. URIs can
/// include wildcards [as described
/// here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
/// Note that recursive wildcards ('**') are not supported.
#[serde(rename="sourceUris")]
pub source_uris: Option<Vec<String>>,
/// A mapping between info field keys and the InfoMergeOperations to
/// be performed on them. This is plumbed down to the MergeVariantRequests
/// generated by the resulting import job.
#[serde(rename="infoMergeConfig")]
pub info_merge_config: Option<HashMap<String, String>>,
/// The format of the variant data being imported. If unspecified, defaults to
/// to `VCF`.
pub format: Option<String>,
}
impl RequestValue for ImportVariantsRequest {}
/// A generic empty message that you can re-use to avoid defining duplicated
/// empty messages in your APIs. A typical example is to use it as the request
/// or the response type of an API method. For instance:
///
/// service Foo {
/// rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty);
/// }
///
/// The JSON representation for `Empty` is empty JSON object `{}`.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [delete datasets](struct.DatasetDeleteCall.html) (response)
/// * [cancel operations](struct.OperationCancelCall.html) (response)
/// * [delete readgroupsets](struct.ReadgroupsetDeleteCall.html) (response)
/// * [delete annotations](struct.AnnotationDeleteCall.html) (response)
/// * [delete callsets](struct.CallsetDeleteCall.html) (response)
/// * [delete variantsets](struct.VariantsetDeleteCall.html) (response)
/// * [delete variants](struct.VariantDeleteCall.html) (response)
/// * [merge variants](struct.VariantMergeCall.html) (response)
/// * [delete annotationsets](struct.AnnotationsetDeleteCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Empty { _never_set: Option<bool> }
impl ResponseResult for Empty {}
/// The `Status` type defines a logical error model that is suitable for different
/// programming environments, including REST APIs and RPC APIs. It is used by
/// [gRPC](https://github.com/grpc). The error model is designed to be:
///
/// - Simple to use and understand for most users
/// - Flexible enough to meet unexpected needs
///
/// # Overview
///
/// The `Status` message contains three pieces of data: error code, error message,
/// and error details. The error code should be an enum value of
/// google.rpc.Code, but it may accept additional error codes if needed. The
/// error message should be a developer-facing English message that helps
/// developers *understand* and *resolve* the error. If a localized user-facing
/// error message is needed, put the localized message in the error details or
/// localize it in the client. The optional error details may contain arbitrary
/// information about the error. There is a predefined set of error detail types
/// in the package `google.rpc` that can be used for common error conditions.
///
/// # Language mapping
///
/// The `Status` message is the logical representation of the error model, but it
/// is not necessarily the actual wire format. When the `Status` message is
/// exposed in different client libraries and different wire protocols, it can be
/// mapped differently. For example, it will likely be mapped to some exceptions
/// in Java, but more likely mapped to some error codes in C.
///
/// # Other uses
///
/// The error model and the `Status` message can be used in a variety of
/// environments, either with or without APIs, to provide a
/// consistent developer experience across different environments.
///
/// Example uses of this error model include:
///
/// - Partial errors. If a service needs to return partial errors to the client,
/// it may embed the `Status` in the normal response to indicate the partial
/// errors.
///
/// - Workflow errors. A typical workflow has multiple steps. Each step may
/// have a `Status` message for error reporting.
///
/// - Batch operations. If a client uses batch request and batch response, the
/// `Status` message should be used directly inside batch response, one for
/// each error sub-response.
///
/// - Asynchronous operations. If an API call embeds asynchronous operation
/// results in its response, the status of those operations should be
/// represented directly using the `Status` message.
///
/// - Logging. If some API errors are stored in logs, the message `Status` could
/// be used directly after any stripping needed for security/privacy reasons.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Status {
/// A developer-facing error message, which should be in English. Any
/// user-facing error message should be localized and sent in the
/// google.rpc.Status.details field, or localized by the client.
pub message: Option<String>,
/// The status code, which should be an enum value of google.rpc.Code.
pub code: Option<i32>,
/// A list of messages that carry the error details. There is a common set of
/// message types for APIs to use.
pub details: Option<Vec<HashMap<String, String>>>,
}
impl Part for Status {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [coveragebuckets list readgroupsets](struct.ReadgroupsetCoveragebucketListCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ListCoverageBucketsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The coverage buckets. The list of buckets is sparse; a bucket with 0
/// overlapping reads is not returned. A bucket never crosses more than one
/// reference sequence. Each bucket has width `bucketWidth`, unless
/// its end is the end of the reference sequence.
#[serde(rename="coverageBuckets")]
pub coverage_buckets: Option<Vec<CoverageBucket>>,
/// The length of each coverage bucket in base pairs. Note that buckets at the
/// end of a reference sequence may be shorter. This value is omitted if the
/// bucket width is infinity (the default behaviour, with no range or
/// `targetBucketWidth`).
#[serde(rename="bucketWidth")]
pub bucket_width: Option<String>,
}
impl ResponseResult for ListCoverageBucketsResponse {}
/// Response message for `TestIamPermissions` method.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [test iam permissions datasets](struct.DatasetTestIamPermissionCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct TestIamPermissionsResponse {
/// A subset of `TestPermissionsRequest.permissions` that the caller is
/// allowed.
pub permissions: Option<Vec<String>>,
}
impl ResponseResult for TestIamPermissionsResponse {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search annotations](struct.AnnotationSearchCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchAnnotationsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The matching annotations.
pub annotations: Option<Vec<Annotation>>,
}
impl ResponseResult for SearchAnnotationsResponse {}
/// A transcript represents the assertion that a particular region of the
/// reference genome may be transcribed as RNA.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Transcript {
/// The range of the coding sequence for this transcript, if any. To determine
/// the exact ranges of coding sequence, intersect this range with those of the
/// exons, if any. If there are any
/// exons, the
/// codingSequence must start
/// and end within them.
///
/// Note that in some cases, the reference genome will not exactly match the
/// observed mRNA transcript e.g. due to variance in the source genome from
/// reference. In these cases,
/// exon.frame will not necessarily
/// match the expected reference reading frame and coding exon reference bases
/// cannot necessarily be concatenated to produce the original transcript mRNA.
#[serde(rename="codingSequence")]
pub coding_sequence: Option<CodingSequence>,
/// The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that compose
/// this transcript. This field should be unset for genomes where transcript
/// splicing does not occur, for example prokaryotes.
///
/// Introns are regions of the transcript that are not included in the
/// spliced RNA product. Though not explicitly modeled here, intron ranges can
/// be deduced; all regions of this transcript that are not exons are introns.
///
/// Exonic sequences do not necessarily code for a translational product
/// (amino acids). Only the regions of exons bounded by the
/// codingSequence correspond
/// to coding DNA sequence.
///
/// Exons are ordered by start position and may not overlap.
pub exons: Option<Vec<Exon>>,
/// The annotation ID of the gene from which this transcript is transcribed.
#[serde(rename="geneId")]
pub gene_id: Option<String>,
}
impl Part for Transcript {}
/// An annotation describes a region of reference genome. The value of an
/// annotation may be one of several canonical types, supplemented by arbitrary
/// info tags. An annotation is not inherently associated with a specific
/// sample or individual (though a client could choose to use annotations in
/// this way). Example canonical annotation types are `GENE` and
/// `VARIANT`.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search annotations](struct.AnnotationSearchCall.html) (none)
/// * [create annotations](struct.AnnotationCreateCall.html) (request|response)
/// * [delete annotations](struct.AnnotationDeleteCall.html) (none)
/// * [update annotations](struct.AnnotationUpdateCall.html) (request|response)
/// * [get annotations](struct.AnnotationGetCall.html) (response)
/// * [batch create annotations](struct.AnnotationBatchCreateCall.html) (none)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Annotation {
/// A map of additional read alignment information. This must be of the form
/// map<string, string[]> (string key mapping to a list of string values).
pub info: Option<HashMap<String, Vec<String>>>,
/// The ID of the Google Genomics reference associated with this range.
#[serde(rename="referenceId")]
pub reference_id: Option<String>,
/// The end position of the range on the reference, 0-based exclusive.
pub end: Option<String>,
/// The display name of this annotation.
pub name: Option<String>,
/// A transcript value represents the assertion that a particular region of
/// the reference genome may be transcribed as RNA. An alternative splicing
/// pattern would be represented as a separate transcript object. This field
/// is only set for annotations of type `TRANSCRIPT`.
pub transcript: Option<Transcript>,
/// A variant annotation, which describes the effect of a variant on the
/// genome, the coding sequence, and/or higher level consequences at the
/// organism level e.g. pathogenicity. This field is only set for annotations
/// of type `VARIANT`.
pub variant: Option<VariantAnnotation>,
/// The start position of the range on the reference, 0-based inclusive.
pub start: Option<String>,
/// The annotation set to which this annotation belongs.
#[serde(rename="annotationSetId")]
pub annotation_set_id: Option<String>,
/// The display name corresponding to the reference specified by
/// `referenceId`, for example `chr1`, `1`, or `chrX`.
#[serde(rename="referenceName")]
pub reference_name: Option<String>,
/// Whether this range refers to the reverse strand, as opposed to the forward
/// strand. Note that regardless of this field, the start/end position of the
/// range always refer to the forward strand.
#[serde(rename="reverseStrand")]
pub reverse_strand: Option<bool>,
/// The data type for this annotation. Must match the containing annotation
/// set's type.
#[serde(rename="type")]
pub type_: Option<String>,
/// The server-generated annotation ID, unique across all annotations.
pub id: Option<String>,
}
impl RequestValue for Annotation {}
impl Resource for Annotation {}
impl ResponseResult for Annotation {}
/// Request message for `GetIamPolicy` method.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [get iam policy datasets](struct.DatasetGetIamPolicyCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct GetIamPolicyRequest { _never_set: Option<bool> }
impl RequestValue for GetIamPolicyRequest {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [merge variants](struct.VariantMergeCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct MergeVariantsRequest {
/// The destination variant set.
#[serde(rename="variantSetId")]
pub variant_set_id: Option<String>,
/// The variants to be merged with existing variants.
pub variants: Option<Vec<Variant>>,
/// A mapping between info field keys and the InfoMergeOperations to
/// be performed on them.
#[serde(rename="infoMergeConfig")]
pub info_merge_config: Option<HashMap<String, String>>,
}
impl RequestValue for MergeVariantsRequest {}
/// Metadata describes a single piece of variant call metadata.
/// These data include a top level key and either a single value string (value)
/// or a list of key-value pairs (info.)
/// Value and info are mutually exclusive.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct VariantSetMetadata {
/// Remaining structured metadata key-value pairs. This must be of the form
/// map<string, string[]> (string key mapping to a list of string values).
pub info: Option<HashMap<String, Vec<String>>>,
/// A textual description of this metadata.
pub description: Option<String>,
/// The top-level key.
pub key: Option<String>,
/// The type of data. Possible types include: Integer, Float,
/// Flag, Character, and String.
#[serde(rename="type")]
pub type_: Option<String>,
/// The number of values that can be included in a field described by this
/// metadata.
pub number: Option<String>,
/// The value field for simple metadata
pub value: Option<String>,
/// User-provided ID field, not enforced by this API.
/// Two or more pieces of structured metadata with identical
/// id and key fields are considered equivalent.
pub id: Option<String>,
}
impl Part for VariantSetMetadata {}
/// There is no detailed description.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ExternalId {
/// The name of the source of this data.
#[serde(rename="sourceName")]
pub source_name: Option<String>,
/// The id used by the source of this data.
pub id: Option<String>,
}
impl Part for ExternalId {}
/// A call set is a collection of variant calls, typically for one sample. It
/// belongs to a variant set.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [create callsets](struct.CallsetCreateCall.html) (request|response)
/// * [patch callsets](struct.CallsetPatchCall.html) (request|response)
/// * [get callsets](struct.CallsetGetCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct CallSet {
/// A map of additional call set information. This must be of the form
/// map<string, string[]> (string key mapping to a list of string values).
pub info: Option<HashMap<String, Vec<String>>>,
/// The IDs of the variant sets this call set belongs to. This field must
/// have exactly length one, as a call set belongs to a single variant set.
/// This field is repeated for compatibility with the
/// [GA4GH 0.5.1
/// API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variants.avdl#L76).
#[serde(rename="variantSetIds")]
pub variant_set_ids: Option<Vec<String>>,
/// The call set name.
pub name: Option<String>,
/// The date this call set was created in milliseconds from the epoch.
pub created: Option<String>,
/// The sample ID this call set corresponds to.
#[serde(rename="sampleId")]
pub sample_id: Option<String>,
/// The server-generated call set ID, unique across all call sets.
pub id: Option<String>,
}
impl RequestValue for CallSet {}
impl Resource for CallSet {}
impl ResponseResult for CallSet {}
/// An abstraction for referring to a genomic position, in relation to some
/// already known reference. For now, represents a genomic position as a
/// reference name, a base number on that reference (0-based), and a
/// determination of forward or reverse strand.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Position {
/// The 0-based offset from the start of the forward strand for that reference.
pub position: Option<String>,
/// Whether this position is on the reverse strand, as opposed to the forward
/// strand.
#[serde(rename="reverseStrand")]
pub reverse_strand: Option<bool>,
/// The name of the reference in whatever reference set is being used.
#[serde(rename="referenceName")]
pub reference_name: Option<String>,
}
impl Part for Position {}
/// The call set search request.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search callsets](struct.CallsetSearchCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchCallSetsRequest {
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
#[serde(rename="pageToken")]
pub page_token: Option<String>,
/// Restrict the query to call sets within the given variant sets. At least one
/// ID must be provided.
#[serde(rename="variantSetIds")]
pub variant_set_ids: Option<Vec<String>>,
/// Only return call sets for which a substring of the name matches this
/// string.
pub name: Option<String>,
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 1024.
#[serde(rename="pageSize")]
pub page_size: Option<i32>,
}
impl RequestValue for SearchCallSetsRequest {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search annotations](struct.AnnotationSearchCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchAnnotationsRequest {
/// The start position of the range on the reference, 0-based inclusive. If
/// specified,
/// referenceId or
/// referenceName
/// must be specified. Defaults to 0.
pub start: Option<String>,
/// The ID of the reference to query.
#[serde(rename="referenceId")]
pub reference_id: Option<String>,
/// The end position of the range on the reference, 0-based exclusive. If
/// referenceId or
/// referenceName
/// must be specified, Defaults to the length of the reference.
pub end: Option<String>,
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 256. The maximum value is 2048.
#[serde(rename="pageSize")]
pub page_size: Option<i32>,
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
#[serde(rename="pageToken")]
pub page_token: Option<String>,
/// The name of the reference to query, within the reference set associated
/// with this query.
#[serde(rename="referenceName")]
pub reference_name: Option<String>,
/// Required. The annotation sets to search within. The caller must have
/// `READ` access to these annotation sets.
/// All queried annotation sets must have the same type.
#[serde(rename="annotationSetIds")]
pub annotation_set_ids: Option<Vec<String>>,
}
impl RequestValue for SearchAnnotationsRequest {}
/// The dataset list response.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [list datasets](struct.DatasetListCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ListDatasetsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The list of matching Datasets.
pub datasets: Option<Vec<Dataset>>,
}
impl ResponseResult for ListDatasetsResponse {}
/// The read group set import request.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [import readgroupsets](struct.ReadgroupsetImportCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ImportReadGroupSetsRequest {
/// A list of URIs pointing at [BAM
/// files](https://samtools.github.io/hts-specs/SAMv1.pdf)
/// in Google Cloud Storage.
/// Those URIs can include wildcards (*), but do not add or remove
/// matching files before import has completed.
///
/// Note that Google Cloud Storage object listing is only eventually
/// consistent: files added may be not be immediately visible to
/// everyone. Thus, if using a wildcard it is preferable not to start
/// the import immediately after the files are created.
#[serde(rename="sourceUris")]
pub source_uris: Option<Vec<String>>,
/// The reference set to which the imported read group sets are aligned to, if
/// any. The reference names of this reference set must be a superset of those
/// found in the imported file headers. If no reference set id is provided, a
/// best effort is made to associate with a matching reference set.
#[serde(rename="referenceSetId")]
pub reference_set_id: Option<String>,
/// The partition strategy describes how read groups are partitioned into read
/// group sets.
#[serde(rename="partitionStrategy")]
pub partition_strategy: Option<String>,
/// Required. The ID of the dataset these read group sets will belong to. The
/// caller must have WRITE permissions to this dataset.
#[serde(rename="datasetId")]
pub dataset_id: Option<String>,
}
impl RequestValue for ImportReadGroupSetsRequest {}
/// A reference is a canonical assembled DNA sequence, intended to act as a
/// reference coordinate space for other genomic annotations. A single reference
/// might represent the human chromosome 1 or mitochandrial DNA, for instance. A
/// reference belongs to one or more reference sets.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [bases list references](struct.ReferenceBaseListCall.html) (none)
/// * [search references](struct.ReferenceSearchCall.html) (none)
/// * [get references](struct.ReferenceGetCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Reference {
/// The length of this reference's sequence.
pub length: Option<String>,
/// The name of this reference, for example `22`.
pub name: Option<String>,
/// The URI from which the sequence was obtained. Typically specifies a FASTA
/// format file.
#[serde(rename="sourceUri")]
pub source_uri: Option<String>,
/// ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
#[serde(rename="ncbiTaxonId")]
pub ncbi_taxon_id: Option<i32>,
/// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
/// with a version number, for example `GCF_000001405.26`.
#[serde(rename="sourceAccessions")]
pub source_accessions: Option<Vec<String>>,
/// The server-generated reference ID, unique across all references.
pub id: Option<String>,
/// MD5 of the upper-case sequence excluding all whitespace characters (this
/// is equivalent to SQ:M5 in SAM). This value is represented in lower case
/// hexadecimal format.
pub md5checksum: Option<String>,
}
impl Resource for Reference {}
impl ResponseResult for Reference {}
/// Associates `members` with a `role`.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Binding {
/// Role that is assigned to `members`.
/// For example, `roles/viewer`, `roles/editor`, or `roles/owner`.
pub role: Option<String>,
/// Unimplemented. The condition that is associated with this binding.
/// NOTE: an unsatisfied condition will not allow user access via current
/// binding. Different bindings, including their conditions, are examined
/// independently.
pub condition: Option<Expr>,
/// Specifies the identities requesting access for a Cloud Platform resource.
/// `members` can have the following values:
///
/// * `allUsers`: A special identifier that represents anyone who is
/// on the internet; with or without a Google account.
///
/// * `allAuthenticatedUsers`: A special identifier that represents anyone
/// who is authenticated with a Google account or a service account.
///
/// * `user:{emailid}`: An email address that represents a specific Google
/// account. For example, `alice@gmail.com` .
///
///
/// * `serviceAccount:{emailid}`: An email address that represents a service
/// account. For example, `my-other-app@appspot.gserviceaccount.com`.
///
/// * `group:{emailid}`: An email address that represents a Google group.
/// For example, `admins@example.com`.
///
///
/// * `domain:{domain}`: A Google Apps domain name that represents all the
/// users of that domain. For example, `google.com` or `example.com`.
///
///
pub members: Option<Vec<String>>,
}
impl Part for Binding {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search references](struct.ReferenceSearchCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchReferencesRequest {
/// If present, return references for which the
/// md5checksum matches exactly.
pub md5checksums: Option<Vec<String>>,
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
#[serde(rename="pageToken")]
pub page_token: Option<String>,
/// If present, return only references which belong to this reference set.
#[serde(rename="referenceSetId")]
pub reference_set_id: Option<String>,
/// If present, return references for which a prefix of any of
/// sourceAccessions match
/// any of these strings. Accession numbers typically have a main number and a
/// version, for example `GCF_000001405.26`.
pub accessions: Option<Vec<String>>,
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 1024. The maximum value is 4096.
#[serde(rename="pageSize")]
pub page_size: Option<i32>,
}
impl RequestValue for SearchReferencesRequest {}
/// There is no detailed description.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Experiment {
/// The sequencing center used as part of this experiment.
#[serde(rename="sequencingCenter")]
pub sequencing_center: Option<String>,
/// A client-supplied library identifier; a library is a collection of DNA
/// fragments which have been prepared for sequencing from a sample. This
/// field is important for quality control as error or bias can be introduced
/// during sample preparation.
#[serde(rename="libraryId")]
pub library_id: Option<String>,
/// The instrument model used as part of this experiment. This maps to
/// sequencing technology in the SAM spec.
#[serde(rename="instrumentModel")]
pub instrument_model: Option<String>,
/// The platform unit used as part of this experiment, for example
/// flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
/// @RG PU field in the SAM spec.
#[serde(rename="platformUnit")]
pub platform_unit: Option<String>,
}
impl Part for Experiment {}
/// A read group is all the data that's processed the same way by the sequencer.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ReadGroup {
/// A map of additional read group information. This must be of the form
/// map<string, string[]> (string key mapping to a list of string values).
pub info: Option<HashMap<String, Vec<String>>>,
/// The predicted insert size of this read group. The insert size is the length
/// the sequenced DNA fragment from end-to-end, not including the adapters.
#[serde(rename="predictedInsertSize")]
pub predicted_insert_size: Option<i32>,
/// The read group name. This corresponds to the @RG ID field in the SAM spec.
pub name: Option<String>,
/// The programs used to generate this read group. Programs are always
/// identical for all read groups within a read group set. For this reason,
/// only the first read group in a returned set will have this field
/// populated.
pub programs: Option<Vec<Program>>,
/// A client-supplied sample identifier for the reads in this read group.
#[serde(rename="sampleId")]
pub sample_id: Option<String>,
/// The experiment used to generate this read group.
pub experiment: Option<Experiment>,
/// The reference set the reads in this read group are aligned to.
#[serde(rename="referenceSetId")]
pub reference_set_id: Option<String>,
/// The server-generated read group ID, unique for all read groups.
/// Note: This is different than the @RG ID field in the SAM spec. For that
/// value, see name.
pub id: Option<String>,
/// The dataset to which this read group belongs.
#[serde(rename="datasetId")]
pub dataset_id: Option<String>,
/// A free-form text description of this read group.
pub description: Option<String>,
}
impl Part for ReadGroup {}
/// The read search request.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search reads](struct.ReadSearchCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchReadsRequest {
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
#[serde(rename="pageToken")]
pub page_token: Option<String>,
/// The IDs of the read groups sets within which to search for reads. All
/// specified read group sets must be aligned against a common set of reference
/// sequences; this defines the genomic coordinates for the query. Must specify
/// one of `readGroupSetIds` or `readGroupIds`.
#[serde(rename="readGroupSetIds")]
pub read_group_set_ids: Option<Vec<String>>,
/// The IDs of the read groups within which to search for reads. All specified
/// read groups must belong to the same read group sets. Must specify one of
/// `readGroupSetIds` or `readGroupIds`.
#[serde(rename="readGroupIds")]
pub read_group_ids: Option<Vec<String>>,
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 256. The maximum value is 2048.
#[serde(rename="pageSize")]
pub page_size: Option<i32>,
/// The start position of the range on the reference, 0-based inclusive. If
/// specified, `referenceName` must also be specified.
pub start: Option<String>,
/// The end position of the range on the reference, 0-based exclusive. If
/// specified, `referenceName` must also be specified.
pub end: Option<String>,
/// The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
/// `*`, only unmapped reads are returned. If unspecified, all reads (mapped
/// and unmapped) are returned.
#[serde(rename="referenceName")]
pub reference_name: Option<String>,
}
impl RequestValue for SearchReadsRequest {}
/// This resource represents a long-running operation that is the result of a
/// network API call.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [cancel operations](struct.OperationCancelCall.html) (none)
/// * [export variantsets](struct.VariantsetExportCall.html) (response)
/// * [export readgroupsets](struct.ReadgroupsetExportCall.html) (response)
/// * [import variants](struct.VariantImportCall.html) (response)
/// * [import readgroupsets](struct.ReadgroupsetImportCall.html) (response)
/// * [get operations](struct.OperationGetCall.html) (response)
/// * [list operations](struct.OperationListCall.html) (none)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Operation {
/// The error result of the operation in case of failure or cancellation.
pub error: Option<Status>,
/// If the value is `false`, it means the operation is still in progress.
/// If `true`, the operation is completed, and either `error` or `response` is
/// available.
pub done: Option<bool>,
/// If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If importing Variants, an ImportVariantsResponse is returned. For pipelines and exports, an Empty response is returned.
pub response: Option<HashMap<String, String>>,
/// The server-assigned name, which is only unique within the same service that originally returns it. For example&#58; `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`
pub name: Option<String>,
/// An OperationMetadata or Metadata object. This will always be returned with the Operation.
pub metadata: Option<HashMap<String, String>>,
}
impl Resource for Operation {}
impl ResponseResult for Operation {}
/// The read group set search request.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search readgroupsets](struct.ReadgroupsetSearchCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchReadGroupSetsRequest {
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
#[serde(rename="pageToken")]
pub page_token: Option<String>,
/// Restricts this query to read group sets within the given datasets. At least
/// one ID must be provided.
#[serde(rename="datasetIds")]
pub dataset_ids: Option<Vec<String>>,
/// Only return read group sets for which a substring of the name matches this
/// string.
pub name: Option<String>,
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 256. The maximum value is 1024.
#[serde(rename="pageSize")]
pub page_size: Option<i32>,
}
impl RequestValue for SearchReadGroupSetsRequest {}
/// Request message for `SetIamPolicy` method.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [set iam policy datasets](struct.DatasetSetIamPolicyCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SetIamPolicyRequest {
/// REQUIRED: The complete policy to be applied to the `resource`. The size of
/// the policy is limited to a few 10s of KB. An empty policy is a
/// valid policy but certain Cloud Platform services (such as Projects)
/// might reject them.
pub policy: Option<Policy>,
}
impl RequestValue for SetIamPolicyRequest {}
/// A call represents the determination of genotype with respect to a particular
/// variant. It may include associated information such as quality and phasing.
/// For example, a call might assign a probability of 0.32 to the occurrence of
/// a SNP named rs1234 in a call set with the name NA12345.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct VariantCall {
/// A map of additional variant call information. This must be of the form
/// map<string, string[]> (string key mapping to a list of string values).
pub info: Option<HashMap<String, Vec<String>>>,
/// The genotype of this variant call. Each value represents either the value
/// of the `referenceBases` field or a 1-based index into
/// `alternateBases`. If a variant had a `referenceBases`
/// value of `T` and an `alternateBases`
/// value of `["A", "C"]`, and the `genotype` was
/// `[2, 1]`, that would mean the call
/// represented the heterozygous value `CA` for this variant.
/// If the `genotype` was instead `[0, 1]`, the
/// represented value would be `TA`. Ordering of the
/// genotype values is important if the `phaseset` is present.
/// If a genotype is not called (that is, a `.` is present in the
/// GT string) -1 is returned.
pub genotype: Option<Vec<i32>>,
/// The ID of the call set this variant call belongs to.
#[serde(rename="callSetId")]
pub call_set_id: Option<String>,
/// If this field is present, this variant call's genotype ordering implies
/// the phase of the bases and is consistent with any other variant calls in
/// the same reference sequence which have the same phaseset value.
/// When importing data from VCF, if the genotype data was phased but no
/// phase set was specified this field will be set to `*`.
pub phaseset: Option<String>,
/// The genotype likelihoods for this variant call. Each array entry
/// represents how likely a specific genotype is for this call. The value
/// ordering is defined by the GL tag in the VCF spec.
/// If Phred-scaled genotype likelihood scores (PL) are available and
/// log10(P) genotype likelihood scores (GL) are not, PL scores are converted
/// to GL scores. If both are available, PL scores are stored in `info`.
#[serde(rename="genotypeLikelihood")]
pub genotype_likelihood: Option<Vec<f64>>,
/// The name of the call set this variant call belongs to.
#[serde(rename="callSetName")]
pub call_set_name: Option<String>,
}
impl Part for VariantCall {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [bases list references](struct.ReferenceBaseListCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ListBasesResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The offset position (0-based) of the given `sequence` from the
/// start of this `Reference`. This value will differ for each page
/// in a paginated request.
pub offset: Option<String>,
/// A substring of the bases that make up this reference.
pub sequence: Option<String>,
}
impl ResponseResult for ListBasesResponse {}
/// ReferenceBound records an upper bound for the starting coordinate of
/// variants in a particular reference.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ReferenceBound {
/// An upper bound (inclusive) on the starting coordinate of any
/// variant in the reference sequence.
#[serde(rename="upperBound")]
pub upper_bound: Option<String>,
/// The name of the reference associated with this reference bound.
#[serde(rename="referenceName")]
pub reference_name: Option<String>,
}
impl Part for ReferenceBound {}
/// Defines an Identity and Access Management (IAM) policy. It is used to
/// specify access control policies for Cloud Platform resources.
///
///
/// A `Policy` consists of a list of `bindings`. A `binding` binds a list of
/// `members` to a `role`, where the members can be user accounts, Google groups,
/// Google domains, and service accounts. A `role` is a named list of permissions
/// defined by IAM.
///
/// **JSON Example**
///
/// {
/// "bindings": [
/// {
/// "role": "roles/owner",
/// "members": [
/// "user:mike@example.com",
/// "group:admins@example.com",
/// "domain:google.com",
/// "serviceAccount:my-other-app@appspot.gserviceaccount.com"
/// ]
/// },
/// {
/// "role": "roles/viewer",
/// "members": ["user:sean@example.com"]
/// }
/// ]
/// }
///
/// **YAML Example**
///
/// bindings:
/// - members:
/// - user:mike@example.com
/// - group:admins@example.com
/// - domain:google.com
/// - serviceAccount:my-other-app@appspot.gserviceaccount.com
/// role: roles/owner
/// - members:
/// - user:sean@example.com
/// role: roles/viewer
///
///
/// For a description of IAM and its features, see the
/// [IAM developer's guide](https://cloud.google.com/iam/docs).
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [set iam policy datasets](struct.DatasetSetIamPolicyCall.html) (response)
/// * [get iam policy datasets](struct.DatasetGetIamPolicyCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Policy {
/// Associates a list of `members` to a `role`.
/// `bindings` with no members will result in an error.
pub bindings: Option<Vec<Binding>>,
/// `etag` is used for optimistic concurrency control as a way to help
/// prevent simultaneous updates of a policy from overwriting each other.
/// It is strongly suggested that systems make use of the `etag` in the
/// read-modify-write cycle to perform policy updates in order to avoid race
/// conditions: An `etag` is returned in the response to `getIamPolicy`, and
/// systems are expected to put that etag in the request to `setIamPolicy` to
/// ensure that their change will be applied to the same version of the policy.
///
/// If no `etag` is provided in the call to `setIamPolicy`, then the existing
/// policy is overwritten blindly.
pub etag: Option<String>,
/// Deprecated.
pub version: Option<i32>,
}
impl ResponseResult for Policy {}
/// The variant search request.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search variants](struct.VariantSearchCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchVariantsRequest {
/// The end of the window, 0-based exclusive. If unspecified or 0, defaults to
/// the length of the reference.
pub end: Option<String>,
/// The maximum number of variants to return in a single page. If unspecified,
/// defaults to 5000. The maximum value is 10000.
#[serde(rename="pageSize")]
pub page_size: Option<i32>,
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
#[serde(rename="pageToken")]
pub page_token: Option<String>,
/// The maximum number of calls to return in a single page. Note that this
/// limit may be exceeded in the event that a matching variant contains more
/// calls than the requested maximum. If unspecified, defaults to 5000. The
/// maximum value is 10000.
#[serde(rename="maxCalls")]
pub max_calls: Option<i32>,
/// The beginning of the window (0-based, inclusive) for which
/// overlapping variants should be returned. If unspecified, defaults to 0.
pub start: Option<String>,
/// At most one variant set ID must be provided. Only variants from this
/// variant set will be returned. If omitted, a call set id must be included in
/// the request.
#[serde(rename="variantSetIds")]
pub variant_set_ids: Option<Vec<String>>,
/// Only return variants which have exactly this name.
#[serde(rename="variantName")]
pub variant_name: Option<String>,
/// Required. Only return variants in this reference sequence.
#[serde(rename="referenceName")]
pub reference_name: Option<String>,
/// Only return variant calls which belong to call sets with these ids.
/// Leaving this blank returns all variant calls. If a variant has no
/// calls belonging to any of these call sets, it won't be returned at all.
#[serde(rename="callSetIds")]
pub call_set_ids: Option<Vec<String>>,
}
impl RequestValue for SearchVariantsRequest {}
/// A reference set is a set of references which typically comprise a reference
/// assembly for a species, such as `GRCh38` which is representative
/// of the human genome. A reference set defines a common coordinate space for
/// comparing reference-aligned experimental data. A reference set contains 1 or
/// more references.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [get referencesets](struct.ReferencesetGetCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ReferenceSet {
/// Free text description of this reference set.
pub description: Option<String>,
/// The URI from which the references were obtained.
#[serde(rename="sourceUri")]
pub source_uri: Option<String>,
/// The IDs of the reference objects that are part of this set.
/// `Reference.md5checksum` must be unique within this set.
#[serde(rename="referenceIds")]
pub reference_ids: Option<Vec<String>>,
/// Public id of this reference set, such as `GRCh37`.
#[serde(rename="assemblyId")]
pub assembly_id: Option<String>,
/// All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
/// with a version number, for example `NC_000001.11`.
#[serde(rename="sourceAccessions")]
pub source_accessions: Option<Vec<String>>,
/// ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
/// indicating the species which this reference set is intended to model. Note
/// that contained references may specify a different `ncbiTaxonId`, as
/// assemblies may contain reference sequences which do not belong to the
/// modeled species, for example EBV in a human reference genome.
#[serde(rename="ncbiTaxonId")]
pub ncbi_taxon_id: Option<i32>,
/// The server-generated reference set ID, unique across all reference sets.
pub id: Option<String>,
/// Order-independent MD5 checksum which identifies this reference set. The
/// checksum is computed by sorting all lower case hexidecimal string
/// `reference.md5checksum` (for all reference in this set) in
/// ascending lexicographic order, concatenating, and taking the MD5 of that
/// value. The resulting value is represented in lower case hexadecimal format.
pub md5checksum: Option<String>,
}
impl Resource for ReferenceSet {}
impl ResponseResult for ReferenceSet {}
/// The variant search response.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search variants](struct.VariantSearchCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchVariantsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The list of matching Variants.
pub variants: Option<Vec<Variant>>,
}
impl ResponseResult for SearchVariantsResponse {}
/// A read alignment describes a linear alignment of a string of DNA to a
/// reference sequence, in addition to metadata
/// about the fragment (the molecule of DNA sequenced) and the read (the bases
/// which were read by the sequencer). A read is equivalent to a line in a SAM
/// file. A read belongs to exactly one read group and exactly one
/// read group set.
///
/// ### Reverse-stranded reads
///
/// Mapped reads (reads having a non-null `alignment`) can be aligned to either
/// the forward or the reverse strand of their associated reference. Strandedness
/// of a mapped read is encoded by `alignment.position.reverseStrand`.
///
/// If we consider the reference to be a forward-stranded coordinate space of
/// `[0, reference.length)` with `0` as the left-most position and
/// `reference.length` as the right-most position, reads are always aligned left
/// to right. That is, `alignment.position.position` always refers to the
/// left-most reference coordinate and `alignment.cigar` describes the alignment
/// of this read to the reference from left to right. All per-base fields such as
/// `alignedSequence` and `alignedQuality` share this same left-to-right
/// orientation; this is true of reads which are aligned to either strand. For
/// reverse-stranded reads, this means that `alignedSequence` is the reverse
/// complement of the bases that were originally reported by the sequencing
/// machine.
///
/// ### Generating a reference-aligned sequence string
///
/// When interacting with mapped reads, it's often useful to produce a string
/// representing the local alignment of the read to reference. The following
/// pseudocode demonstrates one way of doing this:
///
/// out = ""
/// offset = 0
/// for c in read.alignment.cigar {
/// switch c.operation {
/// case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH":
/// out += read.alignedSequence[offset:offset+c.operationLength]
/// offset += c.operationLength
/// break
/// case "CLIP_SOFT", "INSERT":
/// offset += c.operationLength
/// break
/// case "PAD":
/// out += repeat("*", c.operationLength)
/// break
/// case "DELETE":
/// out += repeat("-", c.operationLength)
/// break
/// case "SKIP":
/// out += repeat(" ", c.operationLength)
/// break
/// case "CLIP_HARD":
/// break
/// }
/// }
/// return out
///
/// ### Converting to SAM's CIGAR string
///
/// The following pseudocode generates a SAM CIGAR string from the
/// `cigar` field. Note that this is a lossy conversion
/// (`cigar.referenceSequence` is lost).
///
/// cigarMap = {
/// "ALIGNMENT_MATCH": "M",
/// "INSERT": "I",
/// "DELETE": "D",
/// "SKIP": "N",
/// "CLIP_SOFT": "S",
/// "CLIP_HARD": "H",
/// "PAD": "P",
/// "SEQUENCE_MATCH": "=",
/// "SEQUENCE_MISMATCH": "X",
/// }
/// cigarStr = ""
/// for c in read.alignment.cigar {
/// cigarStr += c.operationLength + cigarMap[c.operation]
/// }
/// return cigarStr
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search reads](struct.ReadSearchCall.html) (none)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Read {
/// The ID of the read group set this read belongs to. A read belongs to
/// exactly one read group set.
#[serde(rename="readGroupSetId")]
pub read_group_set_id: Option<String>,
/// Whether this read did not pass filters, such as platform or vendor quality
/// controls (SAM flag 0x200).
#[serde(rename="failedVendorQualityChecks")]
pub failed_vendor_quality_checks: Option<bool>,
/// The fragment name. Equivalent to QNAME (query template name) in SAM.
#[serde(rename="fragmentName")]
pub fragment_name: Option<String>,
/// The mapping of the primary alignment of the
/// `(readNumber+1)%numberReads` read in the fragment. It replaces
/// mate position and mate strand in SAM.
#[serde(rename="nextMatePosition")]
pub next_mate_position: Option<Position>,
/// Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
/// Supplementary alignments are used in the representation of a chimeric
/// alignment. In a chimeric alignment, a read is split into multiple
/// linear alignments that map to different reference contigs. The first
/// linear alignment in the read will be designated as the representative
/// alignment; the remaining linear alignments will be designated as
/// supplementary alignments. These alignments may have different mapping
/// quality scores. In each linear alignment in a chimeric alignment, the read
/// will be hard clipped. The `alignedSequence` and
/// `alignedQuality` fields in the alignment record will only
/// represent the bases for its respective linear alignment.
#[serde(rename="supplementaryAlignment")]
pub supplementary_alignment: Option<bool>,
/// The observed length of the fragment, equivalent to TLEN in SAM.
#[serde(rename="fragmentLength")]
pub fragment_length: Option<i32>,
/// The server-generated read ID, unique across all reads. This is different
/// from the `fragmentName`.
pub id: Option<String>,
/// The linear alignment for this alignment record. This field is null for
/// unmapped reads.
pub alignment: Option<LinearAlignment>,
/// A map of additional read alignment information. This must be of the form
/// map<string, string[]> (string key mapping to a list of string values).
pub info: Option<HashMap<String, Vec<String>>>,
/// The fragment is a PCR or optical duplicate (SAM flag 0x400).
#[serde(rename="duplicateFragment")]
pub duplicate_fragment: Option<bool>,
/// The quality of the read sequence contained in this alignment record
/// (equivalent to QUAL in SAM).
/// `alignedSequence` and `alignedQuality` may be shorter than the full read
/// sequence and quality. This will occur if the alignment is part of a
/// chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
/// for this read will begin/end with a hard clip operator that will indicate
/// the length of the excised sequence.
#[serde(rename="alignedQuality")]
pub aligned_quality: Option<Vec<i32>>,
/// The read number in sequencing. 0-based and less than numberReads. This
/// field replaces SAM flag 0x40 and 0x80.
#[serde(rename="readNumber")]
pub read_number: Option<i32>,
/// The orientation and the distance between reads from the fragment are
/// consistent with the sequencing protocol (SAM flag 0x2).
#[serde(rename="properPlacement")]
pub proper_placement: Option<bool>,
/// The ID of the read group this read belongs to. A read belongs to exactly
/// one read group. This is a server-generated ID which is distinct from SAM's
/// RG tag (for that value, see
/// ReadGroup.name).
#[serde(rename="readGroupId")]
pub read_group_id: Option<String>,
/// The number of reads in the fragment (extension to SAM flag 0x1).
#[serde(rename="numberReads")]
pub number_reads: Option<i32>,
/// The bases of the read sequence contained in this alignment record,
/// **without CIGAR operations applied** (equivalent to SEQ in SAM).
/// `alignedSequence` and `alignedQuality` may be
/// shorter than the full read sequence and quality. This will occur if the
/// alignment is part of a chimeric alignment, or if the read was trimmed. When
/// this occurs, the CIGAR for this read will begin/end with a hard clip
/// operator that will indicate the length of the excised sequence.
#[serde(rename="alignedSequence")]
pub aligned_sequence: Option<String>,
/// Whether this alignment is secondary. Equivalent to SAM flag 0x100.
/// A secondary alignment represents an alternative to the primary alignment
/// for this read. Aligners may return secondary alignments if a read can map
/// ambiguously to multiple coordinates in the genome. By convention, each read
/// has one and only one alignment where both `secondaryAlignment`
/// and `supplementaryAlignment` are false.
#[serde(rename="secondaryAlignment")]
pub secondary_alignment: Option<bool>,
}
impl Resource for Read {}
/// A variant represents a change in DNA sequence relative to a reference
/// sequence. For example, a variant could represent a SNP or an insertion.
/// Variants belong to a variant set.
///
/// Each of the calls on a variant represent a determination of genotype with
/// respect to that variant. For example, a call might assign probability of 0.32
/// to the occurrence of a SNP named rs1234 in a sample named NA12345. A call
/// belongs to a call set, which contains related calls typically from one
/// sample.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [import variants](struct.VariantImportCall.html) (none)
/// * [delete variants](struct.VariantDeleteCall.html) (none)
/// * [create variants](struct.VariantCreateCall.html) (request|response)
/// * [get variants](struct.VariantGetCall.html) (response)
/// * [patch variants](struct.VariantPatchCall.html) (request|response)
/// * [merge variants](struct.VariantMergeCall.html) (none)
/// * [search variants](struct.VariantSearchCall.html) (none)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Variant {
/// A map of additional variant information. This must be of the form
/// map<string, string[]> (string key mapping to a list of string values).
pub info: Option<HashMap<String, Vec<String>>>,
/// The ID of the variant set this variant belongs to.
#[serde(rename="variantSetId")]
pub variant_set_id: Option<String>,
/// The end position (0-based) of this variant. This corresponds to the first
/// base after the last base in the reference allele. So, the length of
/// the reference allele is (end - start). This is useful for variants
/// that don't explicitly give alternate bases, for example large deletions.
pub end: Option<String>,
/// The variant calls for this particular variant. Each one represents the
/// determination of genotype with respect to this variant.
pub calls: Option<Vec<VariantCall>>,
/// The date this variant was created, in milliseconds from the epoch.
pub created: Option<String>,
/// The server-generated variant ID, unique across all variants.
pub id: Option<String>,
/// A list of filters (normally quality filters) this variant has failed.
/// `PASS` indicates this variant has passed all filters.
pub filter: Option<Vec<String>>,
/// The position at which this variant occurs (0-based).
/// This corresponds to the first base of the string of reference bases.
pub start: Option<String>,
/// Names for the variant, for example a RefSNP ID.
pub names: Option<Vec<String>>,
/// The bases that appear instead of the reference bases.
#[serde(rename="alternateBases")]
pub alternate_bases: Option<Vec<String>>,
/// The reference on which this variant occurs.
/// (such as `chr20` or `X`)
#[serde(rename="referenceName")]
pub reference_name: Option<String>,
/// A measure of how likely this variant is to be real.
/// A higher value is better.
pub quality: Option<f64>,
/// The reference bases for this variant. They start at the given
/// position.
#[serde(rename="referenceBases")]
pub reference_bases: Option<String>,
}
impl RequestValue for Variant {}
impl Resource for Variant {}
impl ResponseResult for Variant {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search annotationsets](struct.AnnotationsetSearchCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchAnnotationSetsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The matching annotation sets.
#[serde(rename="annotationSets")]
pub annotation_sets: Option<Vec<AnnotationSet>>,
}
impl ResponseResult for SearchAnnotationSetsResponse {}
/// There is no detailed description.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Exon {
/// The start position of the exon on this annotation's reference sequence,
/// 0-based inclusive. Note that this is relative to the reference start, and
/// **not** the containing annotation start.
pub start: Option<String>,
/// The frame of this exon. Contains a value of 0, 1, or 2, which indicates
/// the offset of the first coding base of the exon within the reading frame
/// of the coding DNA sequence, if any. This field is dependent on the
/// strandedness of this annotation (see
/// Annotation.reverse_strand).
/// For forward stranded annotations, this offset is relative to the
/// exon.start. For reverse
/// strand annotations, this offset is relative to the
/// exon.end `- 1`.
///
/// Unset if this exon does not intersect the coding sequence. Upon creation
/// of a transcript, the frame must be populated for all or none of the
/// coding exons.
pub frame: Option<i32>,
/// The end position of the exon on this annotation's reference sequence,
/// 0-based exclusive. Note that this is relative to the reference start, and
/// *not* the containing annotation start.
pub end: Option<String>,
}
impl Part for Exon {}
/// The variant data export request.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [export variantsets](struct.VariantsetExportCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ExportVariantSetRequest {
/// Required. The BigQuery dataset to export data to. This dataset must already
/// exist. Note that this is distinct from the Genomics concept of "dataset".
#[serde(rename="bigqueryDataset")]
pub bigquery_dataset: Option<String>,
/// The format for the exported data.
pub format: Option<String>,
/// If provided, only variant call information from the specified call sets
/// will be exported. By default all variant calls are exported.
#[serde(rename="callSetIds")]
pub call_set_ids: Option<Vec<String>>,
/// Required. The Google Cloud project ID that owns the destination
/// BigQuery dataset. The caller must have WRITE access to this project. This
/// project will also own the resulting export job.
#[serde(rename="projectId")]
pub project_id: Option<String>,
/// Required. The BigQuery table to export data to.
/// If the table doesn't exist, it will be created. If it already exists, it
/// will be overwritten.
#[serde(rename="bigqueryTable")]
pub bigquery_table: Option<String>,
}
impl RequestValue for ExportVariantSetRequest {}
/// There is no detailed description.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct CodingSequence {
/// The start of the coding sequence on this annotation's reference sequence,
/// 0-based inclusive. Note that this position is relative to the reference
/// start, and *not* the containing annotation start.
pub start: Option<String>,
/// The end of the coding sequence on this annotation's reference sequence,
/// 0-based exclusive. Note that this position is relative to the reference
/// start, and *not* the containing annotation start.
pub end: Option<String>,
}
impl Part for CodingSequence {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [batch create annotations](struct.AnnotationBatchCreateCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct BatchCreateAnnotationsRequest {
/// The annotations to be created. At most 4096 can be specified in a single
/// request.
pub annotations: Option<Vec<Annotation>>,
/// A unique request ID which enables the server to detect duplicated requests.
/// If provided, duplicated requests will result in the same response; if not
/// provided, duplicated requests may result in duplicated data. For a given
/// annotation set, callers should not reuse `request_id`s when writing
/// different batches of annotations - behavior in this case is undefined.
/// A common approach is to use a UUID. For batch jobs where worker crashes are
/// a possibility, consider using some unique variant of a worker or run ID.
#[serde(rename="requestId")]
pub request_id: Option<String>,
}
impl RequestValue for BatchCreateAnnotationsRequest {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search referencesets](struct.ReferencesetSearchCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchReferenceSetsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The matching references sets.
#[serde(rename="referenceSets")]
pub reference_sets: Option<Vec<ReferenceSet>>,
}
impl ResponseResult for SearchReferenceSetsResponse {}
/// Request message for `TestIamPermissions` method.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [test iam permissions datasets](struct.DatasetTestIamPermissionCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct TestIamPermissionsRequest {
/// REQUIRED: The set of permissions to check for the 'resource'.
/// Permissions with wildcards (such as '*' or 'storage.*') are not allowed.
/// Allowed permissions are&#58;
///
/// * `genomics.datasets.create`
/// * `genomics.datasets.delete`
/// * `genomics.datasets.get`
/// * `genomics.datasets.list`
/// * `genomics.datasets.update`
/// * `genomics.datasets.getIamPolicy`
/// * `genomics.datasets.setIamPolicy`
pub permissions: Option<Vec<String>>,
}
impl RequestValue for TestIamPermissionsRequest {}
/// A variant set is a collection of call sets and variants. It contains summary
/// statistics of those contents. A variant set belongs to a dataset.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [patch variantsets](struct.VariantsetPatchCall.html) (request|response)
/// * [create variantsets](struct.VariantsetCreateCall.html) (request|response)
/// * [get variantsets](struct.VariantsetGetCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct VariantSet {
/// The metadata associated with this variant set.
pub metadata: Option<Vec<VariantSetMetadata>>,
/// User-specified, mutable name.
pub name: Option<String>,
/// A list of all references used by the variants in a variant set
/// with associated coordinate upper bounds for each one.
#[serde(rename="referenceBounds")]
pub reference_bounds: Option<Vec<ReferenceBound>>,
/// The reference set to which the variant set is mapped. The reference set
/// describes the alignment provenance of the variant set, while the
/// `referenceBounds` describe the shape of the actual variant data. The
/// reference set's reference names are a superset of those found in the
/// `referenceBounds`.
///
/// For example, given a variant set that is mapped to the GRCh38 reference set
/// and contains a single variant on reference 'X', `referenceBounds` would
/// contain only an entry for 'X', while the associated reference set
/// enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
#[serde(rename="referenceSetId")]
pub reference_set_id: Option<String>,
/// The server-generated variant set ID, unique across all variant sets.
pub id: Option<String>,
/// The dataset to which this variant set belongs.
#[serde(rename="datasetId")]
pub dataset_id: Option<String>,
/// A textual description of this variant set.
pub description: Option<String>,
}
impl RequestValue for VariantSet {}
impl Resource for VariantSet {}
impl ResponseResult for VariantSet {}
/// Represents an expression text. Example:
///
/// title: "User account presence"
/// description: "Determines whether the request has a user account"
/// expression: "size(request.user) > 0"
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Expr {
/// An optional title for the expression, i.e. a short string describing
/// its purpose. This can be used e.g. in UIs which allow to enter the
/// expression.
pub title: Option<String>,
/// Textual representation of an expression in
/// Common Expression Language syntax.
///
/// The application context of the containing message determines which
/// well-known feature set of CEL is supported.
pub expression: Option<String>,
/// An optional description of the expression. This is a longer text which
/// describes the expression, e.g. when hovered over it in a UI.
pub description: Option<String>,
/// An optional string indicating the location of the expression for error
/// reporting, e.g. a file name and a position in the file.
pub location: Option<String>,
}
impl Part for Expr {}
/// The response message for Operations.ListOperations.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [list operations](struct.OperationListCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ListOperationsResponse {
/// A list of operations that matches the specified filter in the request.
pub operations: Option<Vec<Operation>>,
/// The standard List next-page token.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
}
impl ResponseResult for ListOperationsResponse {}
/// The read group set search response.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search readgroupsets](struct.ReadgroupsetSearchCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchReadGroupSetsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The list of matching read group sets.
#[serde(rename="readGroupSets")]
pub read_group_sets: Option<Vec<ReadGroupSet>>,
}
impl ResponseResult for SearchReadGroupSetsResponse {}
/// A 0-based half-open genomic coordinate range for search requests.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Range {
/// The start position of the range on the reference, 0-based inclusive.
pub start: Option<String>,
/// The end position of the range on the reference, 0-based exclusive.
pub end: Option<String>,
/// The reference sequence name, for example `chr1`,
/// `1`, or `chrX`.
#[serde(rename="referenceName")]
pub reference_name: Option<String>,
}
impl Part for Range {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search annotationsets](struct.AnnotationsetSearchCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchAnnotationSetsRequest {
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
#[serde(rename="pageToken")]
pub page_token: Option<String>,
/// Only return annotations sets for which a substring of the name matches this
/// string (case insensitive).
pub name: Option<String>,
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 128. The maximum value is 1024.
#[serde(rename="pageSize")]
pub page_size: Option<i32>,
/// Required. The dataset IDs to search within. Caller must have `READ` access
/// to these datasets.
#[serde(rename="datasetIds")]
pub dataset_ids: Option<Vec<String>>,
/// If specified, only annotation sets associated with the given reference set
/// are returned.
#[serde(rename="referenceSetId")]
pub reference_set_id: Option<String>,
/// If specified, only annotation sets that have any of these types are
/// returned.
pub types: Option<Vec<String>>,
}
impl RequestValue for SearchAnnotationSetsRequest {}
/// The read search response.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search reads](struct.ReadSearchCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchReadsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The list of matching alignments sorted by mapped genomic coordinate,
/// if any, ascending in position within the same reference. Unmapped reads,
/// which have no position, are returned contiguously and are sorted in
/// ascending lexicographic order by fragment name.
pub alignments: Option<Vec<Read>>,
}
impl ResponseResult for SearchReadsResponse {}
/// There is no detailed description.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Entry {
/// The creation status.
pub status: Option<Status>,
/// The created annotation, if creation was successful.
pub annotation: Option<Annotation>,
}
impl Part for Entry {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search references](struct.ReferenceSearchCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchReferencesResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The matching references.
pub references: Option<Vec<Reference>>,
}
impl ResponseResult for SearchReferencesResponse {}
/// A read group set is a logical collection of read groups, which are
/// collections of reads produced by a sequencer. A read group set typically
/// models reads corresponding to one sample, sequenced one way, and aligned one
/// way.
///
/// * A read group set belongs to one dataset.
/// * A read group belongs to one read group set.
/// * A read belongs to one read group.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [get readgroupsets](struct.ReadgroupsetGetCall.html) (response)
/// * [patch readgroupsets](struct.ReadgroupsetPatchCall.html) (request|response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct ReadGroupSet {
/// A map of additional read group set information.
pub info: Option<HashMap<String, Vec<String>>>,
/// The dataset to which this read group set belongs.
#[serde(rename="datasetId")]
pub dataset_id: Option<String>,
/// The read group set name. By default this will be initialized to the sample
/// name of the sequenced data contained in this set.
pub name: Option<String>,
/// The reference set to which the reads in this read group set are aligned.
#[serde(rename="referenceSetId")]
pub reference_set_id: Option<String>,
/// The server-generated read group set ID, unique for all read group sets.
pub id: Option<String>,
/// The read groups in this set. There are typically 1-10 read groups in a read
/// group set.
#[serde(rename="readGroups")]
pub read_groups: Option<Vec<ReadGroup>>,
/// The filename of the original source file for this read group set, if any.
pub filename: Option<String>,
}
impl RequestValue for ReadGroupSet {}
impl Resource for ReadGroupSet {}
impl ResponseResult for ReadGroupSet {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [batch create annotations](struct.AnnotationBatchCreateCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct BatchCreateAnnotationsResponse {
/// The resulting per-annotation entries, ordered consistently with the
/// original request.
pub entries: Option<Vec<Entry>>,
}
impl ResponseResult for BatchCreateAnnotationsResponse {}
/// A linear alignment can be represented by one CIGAR string. Describes the
/// mapped position and local alignment of the read to the reference.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct LinearAlignment {
/// The position of this alignment.
pub position: Option<Position>,
/// Represents the local alignment of this sequence (alignment matches, indels,
/// etc) against the reference.
pub cigar: Option<Vec<CigarUnit>>,
/// The mapping quality of this alignment. Represents how likely
/// the read maps to this position as opposed to other locations.
///
/// Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
/// the nearest integer.
#[serde(rename="mappingQuality")]
pub mapping_quality: Option<i32>,
}
impl Part for LinearAlignment {}
/// An annotation set is a logical grouping of annotations that share consistent
/// type information and provenance. Examples of annotation sets include 'all
/// genes from refseq', and 'all variant annotations from ClinVar'.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [update annotationsets](struct.AnnotationsetUpdateCall.html) (request|response)
/// * [get annotationsets](struct.AnnotationsetGetCall.html) (response)
/// * [create annotationsets](struct.AnnotationsetCreateCall.html) (request|response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct AnnotationSet {
/// A map of additional read alignment information. This must be of the form
/// map<string, string[]> (string key mapping to a list of string values).
pub info: Option<HashMap<String, Vec<String>>>,
/// The display name for this annotation set.
pub name: Option<String>,
/// The source URI describing the file from which this annotation set was
/// generated, if any.
#[serde(rename="sourceUri")]
pub source_uri: Option<String>,
/// The ID of the reference set that defines the coordinate space for this
/// set's annotations.
#[serde(rename="referenceSetId")]
pub reference_set_id: Option<String>,
/// The type of annotations contained within this set.
#[serde(rename="type")]
pub type_: Option<String>,
/// The server-generated annotation set ID, unique across all annotation sets.
pub id: Option<String>,
/// The dataset to which this annotation set belongs.
#[serde(rename="datasetId")]
pub dataset_id: Option<String>,
}
impl RequestValue for AnnotationSet {}
impl Resource for AnnotationSet {}
impl ResponseResult for AnnotationSet {}
/// A single CIGAR operation.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct CigarUnit {
/// `referenceSequence` is only used at mismatches
/// (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
/// Filling this field replaces SAM's MD tag. If the relevant information is
/// not available, this field is unset.
#[serde(rename="referenceSequence")]
pub reference_sequence: Option<String>,
/// no description provided
pub operation: Option<String>,
/// The number of genomic bases that the operation runs for. Required.
#[serde(rename="operationLength")]
pub operation_length: Option<String>,
}
impl Part for CigarUnit {}
/// A Dataset is a collection of genomic data.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [set iam policy datasets](struct.DatasetSetIamPolicyCall.html) (none)
/// * [delete datasets](struct.DatasetDeleteCall.html) (none)
/// * [get iam policy datasets](struct.DatasetGetIamPolicyCall.html) (none)
/// * [test iam permissions datasets](struct.DatasetTestIamPermissionCall.html) (none)
/// * [get datasets](struct.DatasetGetCall.html) (response)
/// * [undelete datasets](struct.DatasetUndeleteCall.html) (response)
/// * [create datasets](struct.DatasetCreateCall.html) (request|response)
/// * [patch datasets](struct.DatasetPatchCall.html) (request|response)
/// * [list datasets](struct.DatasetListCall.html) (none)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct Dataset {
/// The Google Cloud project ID that this dataset belongs to.
#[serde(rename="projectId")]
pub project_id: Option<String>,
/// The server-generated dataset ID, unique across all datasets.
pub id: Option<String>,
/// The dataset name.
pub name: Option<String>,
/// The time this dataset was created, in seconds from the epoch.
#[serde(rename="createTime")]
pub create_time: Option<String>,
}
impl RequestValue for Dataset {}
impl Resource for Dataset {}
impl ResponseResult for Dataset {}
/// The request message for Operations.CancelOperation.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [cancel operations](struct.OperationCancelCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct CancelOperationRequest { _never_set: Option<bool> }
impl RequestValue for CancelOperationRequest {}
/// The search variant sets response.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search variantsets](struct.VariantsetSearchCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchVariantSetsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The variant sets belonging to the requested dataset.
#[serde(rename="variantSets")]
pub variant_sets: Option<Vec<VariantSet>>,
}
impl ResponseResult for SearchVariantSetsResponse {}
/// A bucket over which read coverage has been precomputed. A bucket corresponds
/// to a specific range of the reference sequence.
///
/// This type is not used in any activity, and only used as *part* of another schema.
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct CoverageBucket {
/// The average number of reads which are aligned to each individual
/// reference base in this bucket.
#[serde(rename="meanCoverage")]
pub mean_coverage: Option<f32>,
/// The genomic coordinate range spanned by this bucket.
pub range: Option<Range>,
}
impl Part for CoverageBucket {}
/// The call set search response.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search callsets](struct.CallsetSearchCall.html) (response)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchCallSetsResponse {
/// The continuation token, which is used to page through large result sets.
/// Provide this value in a subsequent request to return the next page of
/// results. This field will be empty if there aren't any additional results.
#[serde(rename="nextPageToken")]
pub next_page_token: Option<String>,
/// The list of matching call sets.
#[serde(rename="callSets")]
pub call_sets: Option<Vec<CallSet>>,
}
impl ResponseResult for SearchCallSetsResponse {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [search referencesets](struct.ReferencesetSearchCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct SearchReferenceSetsRequest {
/// If present, return reference sets for which the
/// md5checksum matches exactly.
pub md5checksums: Option<Vec<String>>,
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
#[serde(rename="pageToken")]
pub page_token: Option<String>,
/// If present, return reference sets for which a prefix of any of
/// sourceAccessions
/// match any of these strings. Accession numbers typically have a main number
/// and a version, for example `NC_000001.11`.
pub accessions: Option<Vec<String>>,
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 1024. The maximum value is 4096.
#[serde(rename="pageSize")]
pub page_size: Option<i32>,
/// If present, return reference sets for which a substring of their
/// `assemblyId` matches this string (case insensitive).
#[serde(rename="assemblyId")]
pub assembly_id: Option<String>,
}
impl RequestValue for SearchReferenceSetsRequest {}
/// There is no detailed description.
///
/// # Activities
///
/// This type is used in activities, which are methods you may call on this type or where this type is involved in.
/// The list links the activity name, along with information about where it is used (one of *request* and *response*).
///
/// * [undelete datasets](struct.DatasetUndeleteCall.html) (request)
///
#[derive(Default, Clone, Debug, Serialize, Deserialize)]
pub struct UndeleteDatasetRequest { _never_set: Option<bool> }
impl RequestValue for UndeleteDatasetRequest {}
// ###################
// MethodBuilders ###
// #################
/// A builder providing access to all methods supported on *operation* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `cancel(...)`, `get(...)` and `list(...)`
/// // to build up your call.
/// let rb = hub.operations();
/// # }
/// ```
pub struct OperationMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for OperationMethods<'a, C, A> {}
impl<'a, C, A> OperationMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Starts asynchronous cancellation on a long-running operation.
/// The server makes a best effort to cancel the operation, but success is not
/// guaranteed. Clients may use Operations.GetOperation
/// or Operations.ListOperations
/// to check whether the cancellation succeeded or the operation completed
/// despite cancellation.
/// Authorization requires the following [Google IAM](https://cloud.google.com/iam) permission&#58;
///
/// * `genomics.operations.cancel`
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `name` - The name of the operation resource to be cancelled.
pub fn cancel(&self, request: CancelOperationRequest, name: &str) -> OperationCancelCall<'a, C, A> {
OperationCancelCall {
hub: self.hub,
_request: request,
_name: name.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets the latest state of a long-running operation.
/// Clients can use this method to poll the operation result at intervals as
/// recommended by the API service.
/// Authorization requires the following [Google IAM](https://cloud.google.com/iam) permission&#58;
///
/// * `genomics.operations.get`
///
/// # Arguments
///
/// * `name` - The name of the operation resource.
pub fn get(&self, name: &str) -> OperationGetCall<'a, C, A> {
OperationGetCall {
hub: self.hub,
_name: name.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Lists operations that match the specified filter in the request.
/// Authorization requires the following [Google IAM](https://cloud.google.com/iam) permission&#58;
///
/// * `genomics.operations.list`
///
/// # Arguments
///
/// * `name` - The name of the operation's parent resource.
pub fn list(&self, name: &str) -> OperationListCall<'a, C, A> {
OperationListCall {
hub: self.hub,
_name: name.to_string(),
_page_token: Default::default(),
_page_size: Default::default(),
_filter: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *dataset* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `create(...)`, `delete(...)`, `get(...)`, `get_iam_policy(...)`, `list(...)`, `patch(...)`, `set_iam_policy(...)`, `test_iam_permissions(...)` and `undelete(...)`
/// // to build up your call.
/// let rb = hub.datasets();
/// # }
/// ```
pub struct DatasetMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for DatasetMethods<'a, C, A> {}
impl<'a, C, A> DatasetMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Creates a new dataset.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn create(&self, request: Dataset) -> DatasetCreateCall<'a, C, A> {
DatasetCreateCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Deletes a dataset and all of its contents (all read group sets,
/// reference sets, variant sets, call sets, annotation sets, etc.)
/// This is reversible (up to one week after the deletion) via
/// the
/// datasets.undelete
/// operation.
///
/// # Arguments
///
/// * `datasetId` - The ID of the dataset to be deleted.
pub fn delete(&self, dataset_id: &str) -> DatasetDeleteCall<'a, C, A> {
DatasetDeleteCall {
hub: self.hub,
_dataset_id: dataset_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Undeletes a dataset by restoring a dataset which was deleted via this API.
///
/// This operation is only possible for a week after the deletion occurred.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `datasetId` - The ID of the dataset to be undeleted.
pub fn undelete(&self, request: UndeleteDatasetRequest, dataset_id: &str) -> DatasetUndeleteCall<'a, C, A> {
DatasetUndeleteCall {
hub: self.hub,
_request: request,
_dataset_id: dataset_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Sets the access control policy on the specified dataset. Replaces any
/// existing policy.
///
/// See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
/// Policy</a> for more information.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `resource` - REQUIRED: The resource for which policy is being specified. Format is
/// `datasets/<dataset ID>`.
pub fn set_iam_policy(&self, request: SetIamPolicyRequest, resource: &str) -> DatasetSetIamPolicyCall<'a, C, A> {
DatasetSetIamPolicyCall {
hub: self.hub,
_request: request,
_resource: resource.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Returns permissions that a caller has on the specified resource.
/// See <a href="/iam/docs/managing-policies#testing_permissions">Testing
/// Permissions</a> for more information.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `resource` - REQUIRED: The resource for which policy is being specified. Format is
/// `datasets/<dataset ID>`.
pub fn test_iam_permissions(&self, request: TestIamPermissionsRequest, resource: &str) -> DatasetTestIamPermissionCall<'a, C, A> {
DatasetTestIamPermissionCall {
hub: self.hub,
_request: request,
_resource: resource.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets a dataset by ID.
///
/// # Arguments
///
/// * `datasetId` - The ID of the dataset.
pub fn get(&self, dataset_id: &str) -> DatasetGetCall<'a, C, A> {
DatasetGetCall {
hub: self.hub,
_dataset_id: dataset_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Lists datasets within a project.
pub fn list(&self) -> DatasetListCall<'a, C, A> {
DatasetListCall {
hub: self.hub,
_project_id: Default::default(),
_page_token: Default::default(),
_page_size: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets the access control policy for the dataset. This is empty if the
/// policy or resource does not exist.
///
/// See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
/// Policy</a> for more information.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `resource` - REQUIRED: The resource for which policy is being specified. Format is
/// `datasets/<dataset ID>`.
pub fn get_iam_policy(&self, request: GetIamPolicyRequest, resource: &str) -> DatasetGetIamPolicyCall<'a, C, A> {
DatasetGetIamPolicyCall {
hub: self.hub,
_request: request,
_resource: resource.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Updates a dataset.
///
/// This method supports patch semantics.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `datasetId` - The ID of the dataset to be updated.
pub fn patch(&self, request: Dataset, dataset_id: &str) -> DatasetPatchCall<'a, C, A> {
DatasetPatchCall {
hub: self.hub,
_request: request,
_dataset_id: dataset_id.to_string(),
_update_mask: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *referenceset* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `get(...)` and `search(...)`
/// // to build up your call.
/// let rb = hub.referencesets();
/// # }
/// ```
pub struct ReferencesetMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for ReferencesetMethods<'a, C, A> {}
impl<'a, C, A> ReferencesetMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Searches for reference sets which match the given criteria.
///
/// Implements
/// [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn search(&self, request: SearchReferenceSetsRequest) -> ReferencesetSearchCall<'a, C, A> {
ReferencesetSearchCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets a reference set.
///
/// Implements
/// [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
///
/// # Arguments
///
/// * `referenceSetId` - The ID of the reference set.
pub fn get(&self, reference_set_id: &str) -> ReferencesetGetCall<'a, C, A> {
ReferencesetGetCall {
hub: self.hub,
_reference_set_id: reference_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *callset* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `create(...)`, `delete(...)`, `get(...)`, `patch(...)` and `search(...)`
/// // to build up your call.
/// let rb = hub.callsets();
/// # }
/// ```
pub struct CallsetMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for CallsetMethods<'a, C, A> {}
impl<'a, C, A> CallsetMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Gets a list of call sets matching the criteria.
///
/// Implements
/// [GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn search(&self, request: SearchCallSetsRequest) -> CallsetSearchCall<'a, C, A> {
CallsetSearchCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Updates a call set.
///
/// This method supports patch semantics.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `callSetId` - The ID of the call set to be updated.
pub fn patch(&self, request: CallSet, call_set_id: &str) -> CallsetPatchCall<'a, C, A> {
CallsetPatchCall {
hub: self.hub,
_request: request,
_call_set_id: call_set_id.to_string(),
_update_mask: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Creates a new call set.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn create(&self, request: CallSet) -> CallsetCreateCall<'a, C, A> {
CallsetCreateCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Deletes a call set.
///
/// # Arguments
///
/// * `callSetId` - The ID of the call set to be deleted.
pub fn delete(&self, call_set_id: &str) -> CallsetDeleteCall<'a, C, A> {
CallsetDeleteCall {
hub: self.hub,
_call_set_id: call_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets a call set by ID.
///
/// # Arguments
///
/// * `callSetId` - The ID of the call set.
pub fn get(&self, call_set_id: &str) -> CallsetGetCall<'a, C, A> {
CallsetGetCall {
hub: self.hub,
_call_set_id: call_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *read* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `search(...)`
/// // to build up your call.
/// let rb = hub.reads();
/// # }
/// ```
pub struct ReadMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for ReadMethods<'a, C, A> {}
impl<'a, C, A> ReadMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Gets a list of reads for one or more read group sets.
///
/// Reads search operates over a genomic coordinate space of reference sequence
/// & position defined over the reference sequences to which the requested
/// read group sets are aligned.
///
/// If a target positional range is specified, search returns all reads whose
/// alignment to the reference genome overlap the range. A query which
/// specifies only read group set IDs yields all reads in those read group
/// sets, including unmapped reads.
///
/// All reads returned (including reads on subsequent pages) are ordered by
/// genomic coordinate (by reference sequence, then position). Reads with
/// equivalent genomic coordinates are returned in an unspecified order. This
/// order is consistent, such that two queries for the same content (regardless
/// of page size) yield reads in the same order across their respective streams
/// of paginated responses.
///
/// Implements
/// [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn search(&self, request: SearchReadsRequest) -> ReadSearchCall<'a, C, A> {
ReadSearchCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *readgroupset* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `coveragebuckets_list(...)`, `delete(...)`, `export(...)`, `get(...)`, `import(...)`, `patch(...)` and `search(...)`
/// // to build up your call.
/// let rb = hub.readgroupsets();
/// # }
/// ```
pub struct ReadgroupsetMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for ReadgroupsetMethods<'a, C, A> {}
impl<'a, C, A> ReadgroupsetMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Exports a read group set to a BAM file in Google Cloud Storage.
///
/// Note that currently there may be some differences between exported BAM
/// files and the original BAM file at the time of import. See
/// ImportReadGroupSets
/// for caveats.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `readGroupSetId` - Required. The ID of the read group set to export. The caller must have
/// READ access to this read group set.
pub fn export(&self, request: ExportReadGroupSetRequest, read_group_set_id: &str) -> ReadgroupsetExportCall<'a, C, A> {
ReadgroupsetExportCall {
hub: self.hub,
_request: request,
_read_group_set_id: read_group_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Creates read group sets by asynchronously importing the provided
/// information.
///
/// The caller must have WRITE permissions to the dataset.
///
/// ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
///
/// - Tags will be converted to strings - tag types are not preserved
/// - Comments (`@CO`) in the input file header will not be preserved
/// - Original header order of references (`@SQ`) will not be preserved
/// - Any reverse stranded unmapped reads will be reverse complemented, and
/// their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
/// - Unmapped reads will be stripped of positional information (reference name
/// and position)
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn import(&self, request: ImportReadGroupSetsRequest) -> ReadgroupsetImportCall<'a, C, A> {
ReadgroupsetImportCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Updates a read group set.
///
/// This method supports patch semantics.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `readGroupSetId` - The ID of the read group set to be updated. The caller must have WRITE
/// permissions to the dataset associated with this read group set.
pub fn patch(&self, request: ReadGroupSet, read_group_set_id: &str) -> ReadgroupsetPatchCall<'a, C, A> {
ReadgroupsetPatchCall {
hub: self.hub,
_request: request,
_read_group_set_id: read_group_set_id.to_string(),
_update_mask: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets a read group set by ID.
///
/// # Arguments
///
/// * `readGroupSetId` - The ID of the read group set.
pub fn get(&self, read_group_set_id: &str) -> ReadgroupsetGetCall<'a, C, A> {
ReadgroupsetGetCall {
hub: self.hub,
_read_group_set_id: read_group_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Lists fixed width coverage buckets for a read group set, each of which
/// correspond to a range of a reference sequence. Each bucket summarizes
/// coverage information across its corresponding genomic range.
///
/// Coverage is defined as the number of reads which are aligned to a given
/// base in the reference sequence. Coverage buckets are available at several
/// precomputed bucket widths, enabling retrieval of various coverage 'zoom
/// levels'. The caller must have READ permissions for the target read group
/// set.
///
/// # Arguments
///
/// * `readGroupSetId` - Required. The ID of the read group set over which coverage is requested.
pub fn coveragebuckets_list(&self, read_group_set_id: &str) -> ReadgroupsetCoveragebucketListCall<'a, C, A> {
ReadgroupsetCoveragebucketListCall {
hub: self.hub,
_read_group_set_id: read_group_set_id.to_string(),
_target_bucket_width: Default::default(),
_start: Default::default(),
_reference_name: Default::default(),
_page_token: Default::default(),
_page_size: Default::default(),
_end: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Deletes a read group set.
///
/// # Arguments
///
/// * `readGroupSetId` - The ID of the read group set to be deleted. The caller must have WRITE
/// permissions to the dataset associated with this read group set.
pub fn delete(&self, read_group_set_id: &str) -> ReadgroupsetDeleteCall<'a, C, A> {
ReadgroupsetDeleteCall {
hub: self.hub,
_read_group_set_id: read_group_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Searches for read group sets matching the criteria.
///
/// Implements
/// [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn search(&self, request: SearchReadGroupSetsRequest) -> ReadgroupsetSearchCall<'a, C, A> {
ReadgroupsetSearchCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *reference* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `bases_list(...)`, `get(...)` and `search(...)`
/// // to build up your call.
/// let rb = hub.references();
/// # }
/// ```
pub struct ReferenceMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for ReferenceMethods<'a, C, A> {}
impl<'a, C, A> ReferenceMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Lists the bases in a reference, optionally restricted to a range.
///
/// Implements
/// [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
///
/// # Arguments
///
/// * `referenceId` - The ID of the reference.
pub fn bases_list(&self, reference_id: &str) -> ReferenceBaseListCall<'a, C, A> {
ReferenceBaseListCall {
hub: self.hub,
_reference_id: reference_id.to_string(),
_start: Default::default(),
_page_token: Default::default(),
_page_size: Default::default(),
_end: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Searches for references which match the given criteria.
///
/// Implements
/// [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn search(&self, request: SearchReferencesRequest) -> ReferenceSearchCall<'a, C, A> {
ReferenceSearchCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets a reference.
///
/// Implements
/// [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
///
/// # Arguments
///
/// * `referenceId` - The ID of the reference.
pub fn get(&self, reference_id: &str) -> ReferenceGetCall<'a, C, A> {
ReferenceGetCall {
hub: self.hub,
_reference_id: reference_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *variant* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `create(...)`, `delete(...)`, `get(...)`, `import(...)`, `merge(...)`, `patch(...)` and `search(...)`
/// // to build up your call.
/// let rb = hub.variants();
/// # }
/// ```
pub struct VariantMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for VariantMethods<'a, C, A> {}
impl<'a, C, A> VariantMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Gets a list of variants matching the criteria.
///
/// Implements
/// [GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L126).
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn search(&self, request: SearchVariantsRequest) -> VariantSearchCall<'a, C, A> {
VariantSearchCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Deletes a variant.
///
/// # Arguments
///
/// * `variantId` - The ID of the variant to be deleted.
pub fn delete(&self, variant_id: &str) -> VariantDeleteCall<'a, C, A> {
VariantDeleteCall {
hub: self.hub,
_variant_id: variant_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets a variant by ID.
///
/// # Arguments
///
/// * `variantId` - The ID of the variant.
pub fn get(&self, variant_id: &str) -> VariantGetCall<'a, C, A> {
VariantGetCall {
hub: self.hub,
_variant_id: variant_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Merges the given variants with existing variants.
///
/// Each variant will be
/// merged with an existing variant that matches its reference sequence,
/// start, end, reference bases, and alternative bases. If no such variant
/// exists, a new one will be created.
///
/// When variants are merged, the call information from the new variant
/// is added to the existing variant. Variant info fields are merged as
/// specified in the
/// infoMergeConfig
/// field of the MergeVariantsRequest.
///
/// Please exercise caution when using this method! It is easy to introduce
/// mistakes in existing variants and difficult to back out of them. For
/// example,
/// suppose you were trying to merge a new variant with an existing one and
/// both
/// variants contain calls that belong to callsets with the same callset ID.
///
/// // Existing variant - irrelevant fields trimmed for clarity
/// {
/// "variantSetId": "10473108253681171589",
/// "referenceName": "1",
/// "start": "10582",
/// "referenceBases": "G",
/// "alternateBases": [
/// "A"
/// ],
/// "calls": [
/// {
/// "callSetId": "10473108253681171589-0",
/// "callSetName": "CALLSET0",
/// "genotype": [
/// 0,
/// 1
/// ],
/// }
/// ]
/// }
///
/// // New variant with conflicting call information
/// {
/// "variantSetId": "10473108253681171589",
/// "referenceName": "1",
/// "start": "10582",
/// "referenceBases": "G",
/// "alternateBases": [
/// "A"
/// ],
/// "calls": [
/// {
/// "callSetId": "10473108253681171589-0",
/// "callSetName": "CALLSET0",
/// "genotype": [
/// 1,
/// 1
/// ],
/// }
/// ]
/// }
///
/// The resulting merged variant would overwrite the existing calls with those
/// from the new variant:
///
/// {
/// "variantSetId": "10473108253681171589",
/// "referenceName": "1",
/// "start": "10582",
/// "referenceBases": "G",
/// "alternateBases": [
/// "A"
/// ],
/// "calls": [
/// {
/// "callSetId": "10473108253681171589-0",
/// "callSetName": "CALLSET0",
/// "genotype": [
/// 1,
/// 1
/// ],
/// }
/// ]
/// }
///
/// This may be the desired outcome, but it is up to the user to determine if
/// if that is indeed the case.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn merge(&self, request: MergeVariantsRequest) -> VariantMergeCall<'a, C, A> {
VariantMergeCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Creates a new variant.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn create(&self, request: Variant) -> VariantCreateCall<'a, C, A> {
VariantCreateCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Creates variant data by asynchronously importing the provided information.
///
/// The variants for import will be merged with any existing variant that
/// matches its reference sequence, start, end, reference bases, and
/// alternative bases. If no such variant exists, a new one will be created.
///
/// When variants are merged, the call information from the new variant
/// is added to the existing variant, and Variant info fields are merged
/// as specified in
/// infoMergeConfig.
/// As a special case, for single-sample VCF files, QUAL and FILTER fields will
/// be moved to the call level; these are sometimes interpreted in a
/// call-specific context.
/// Imported VCF headers are appended to the metadata already in a variant set.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn import(&self, request: ImportVariantsRequest) -> VariantImportCall<'a, C, A> {
VariantImportCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Updates a variant.
///
/// This method supports patch semantics. Returns the modified variant without
/// its calls.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `variantId` - The ID of the variant to be updated.
pub fn patch(&self, request: Variant, variant_id: &str) -> VariantPatchCall<'a, C, A> {
VariantPatchCall {
hub: self.hub,
_request: request,
_variant_id: variant_id.to_string(),
_update_mask: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *annotation* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `batch_create(...)`, `create(...)`, `delete(...)`, `get(...)`, `search(...)` and `update(...)`
/// // to build up your call.
/// let rb = hub.annotations();
/// # }
/// ```
pub struct AnnotationMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for AnnotationMethods<'a, C, A> {}
impl<'a, C, A> AnnotationMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Updates an annotation. Caller must have
/// WRITE permission for the associated dataset.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `annotationId` - The ID of the annotation to be updated.
pub fn update(&self, request: Annotation, annotation_id: &str) -> AnnotationUpdateCall<'a, C, A> {
AnnotationUpdateCall {
hub: self.hub,
_request: request,
_annotation_id: annotation_id.to_string(),
_update_mask: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets an annotation. Caller must have READ permission
/// for the associated annotation set.
///
/// # Arguments
///
/// * `annotationId` - The ID of the annotation to be retrieved.
pub fn get(&self, annotation_id: &str) -> AnnotationGetCall<'a, C, A> {
AnnotationGetCall {
hub: self.hub,
_annotation_id: annotation_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Searches for annotations that match the given criteria. Results are
/// ordered by genomic coordinate (by reference sequence, then position).
/// Annotations with equivalent genomic coordinates are returned in an
/// unspecified order. This order is consistent, such that two queries for the
/// same content (regardless of page size) yield annotations in the same order
/// across their respective streams of paginated responses. Caller must have
/// READ permission for the queried annotation sets.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn search(&self, request: SearchAnnotationsRequest) -> AnnotationSearchCall<'a, C, A> {
AnnotationSearchCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Deletes an annotation. Caller must have WRITE permission for
/// the associated annotation set.
///
/// # Arguments
///
/// * `annotationId` - The ID of the annotation to be deleted.
pub fn delete(&self, annotation_id: &str) -> AnnotationDeleteCall<'a, C, A> {
AnnotationDeleteCall {
hub: self.hub,
_annotation_id: annotation_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Creates a new annotation. Caller must have WRITE permission
/// for the associated annotation set.
///
/// The following fields are required:
///
/// * annotationSetId
/// * referenceName or
/// referenceId
///
/// ### Transcripts
///
/// For annotations of type TRANSCRIPT, the following fields of
/// transcript must be provided:
///
/// * exons.start
/// * exons.end
///
/// All other fields may be optionally specified, unless documented as being
/// server-generated (for example, the `id` field). The annotated
/// range must be no longer than 100Mbp (mega base pairs). See the
/// Annotation resource
/// for additional restrictions on each field.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn create(&self, request: Annotation) -> AnnotationCreateCall<'a, C, A> {
AnnotationCreateCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Creates one or more new annotations atomically. All annotations must
/// belong to the same annotation set. Caller must have WRITE
/// permission for this annotation set. For optimal performance, batch
/// positionally adjacent annotations together.
///
/// If the request has a systemic issue, such as an attempt to write to
/// an inaccessible annotation set, the entire RPC will fail accordingly. For
/// lesser data issues, when possible an error will be isolated to the
/// corresponding batch entry in the response; the remaining well formed
/// annotations will be created normally.
///
/// For details on the requirements for each individual annotation resource,
/// see
/// CreateAnnotation.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn batch_create(&self, request: BatchCreateAnnotationsRequest) -> AnnotationBatchCreateCall<'a, C, A> {
AnnotationBatchCreateCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *annotationset* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `create(...)`, `delete(...)`, `get(...)`, `search(...)` and `update(...)`
/// // to build up your call.
/// let rb = hub.annotationsets();
/// # }
/// ```
pub struct AnnotationsetMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for AnnotationsetMethods<'a, C, A> {}
impl<'a, C, A> AnnotationsetMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Updates an annotation set. The update must respect all mutability
/// restrictions and other invariants described on the annotation set resource.
/// Caller must have WRITE permission for the associated dataset.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `annotationSetId` - The ID of the annotation set to be updated.
pub fn update(&self, request: AnnotationSet, annotation_set_id: &str) -> AnnotationsetUpdateCall<'a, C, A> {
AnnotationsetUpdateCall {
hub: self.hub,
_request: request,
_annotation_set_id: annotation_set_id.to_string(),
_update_mask: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Searches for annotation sets that match the given criteria. Annotation sets
/// are returned in an unspecified order. This order is consistent, such that
/// two queries for the same content (regardless of page size) yield annotation
/// sets in the same order across their respective streams of paginated
/// responses. Caller must have READ permission for the queried datasets.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn search(&self, request: SearchAnnotationSetsRequest) -> AnnotationsetSearchCall<'a, C, A> {
AnnotationsetSearchCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Creates a new annotation set. Caller must have WRITE permission for the
/// associated dataset.
///
/// The following fields are required:
///
/// * datasetId
/// * referenceSetId
///
/// All other fields may be optionally specified, unless documented as being
/// server-generated (for example, the `id` field).
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn create(&self, request: AnnotationSet) -> AnnotationsetCreateCall<'a, C, A> {
AnnotationsetCreateCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Deletes an annotation set. Caller must have WRITE permission
/// for the associated annotation set.
///
/// # Arguments
///
/// * `annotationSetId` - The ID of the annotation set to be deleted.
pub fn delete(&self, annotation_set_id: &str) -> AnnotationsetDeleteCall<'a, C, A> {
AnnotationsetDeleteCall {
hub: self.hub,
_annotation_set_id: annotation_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets an annotation set. Caller must have READ permission for
/// the associated dataset.
///
/// # Arguments
///
/// * `annotationSetId` - The ID of the annotation set to be retrieved.
pub fn get(&self, annotation_set_id: &str) -> AnnotationsetGetCall<'a, C, A> {
AnnotationsetGetCall {
hub: self.hub,
_annotation_set_id: annotation_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
/// A builder providing access to all methods supported on *variantset* resources.
/// It is not used directly, but through the `Genomics` hub.
///
/// # Example
///
/// Instantiate a resource builder
///
/// ```test_harness,no_run
/// extern crate hyper;
/// extern crate hyper_rustls;
/// extern crate yup_oauth2 as oauth2;
/// extern crate google_genomics1 as genomics1;
///
/// # #[test] fn egal() {
/// use std::default::Default;
/// use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// use genomics1::Genomics;
///
/// let secret: ApplicationSecret = Default::default();
/// let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// <MemoryStorage as Default>::default(), None);
/// let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // Usually you wouldn't bind this to a variable, but keep calling *CallBuilders*
/// // like `create(...)`, `delete(...)`, `export(...)`, `get(...)`, `patch(...)` and `search(...)`
/// // to build up your call.
/// let rb = hub.variantsets();
/// # }
/// ```
pub struct VariantsetMethods<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
}
impl<'a, C, A> MethodsBuilder for VariantsetMethods<'a, C, A> {}
impl<'a, C, A> VariantsetMethods<'a, C, A> {
/// Create a builder to help you perform the following task:
///
/// Creates a new variant set.
///
/// The provided variant set must have a valid `datasetId` set - all other
/// fields are optional. Note that the `id` field will be ignored, as this is
/// assigned by the server.
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn create(&self, request: VariantSet) -> VariantsetCreateCall<'a, C, A> {
VariantsetCreateCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Deletes a variant set including all variants, call sets, and calls within.
/// This is not reversible.
///
/// # Arguments
///
/// * `variantSetId` - The ID of the variant set to be deleted.
pub fn delete(&self, variant_set_id: &str) -> VariantsetDeleteCall<'a, C, A> {
VariantsetDeleteCall {
hub: self.hub,
_variant_set_id: variant_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Exports variant set data to an external destination.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `variantSetId` - Required. The ID of the variant set that contains variant data which
/// should be exported. The caller must have READ access to this variant set.
pub fn export(&self, request: ExportVariantSetRequest, variant_set_id: &str) -> VariantsetExportCall<'a, C, A> {
VariantsetExportCall {
hub: self.hub,
_request: request,
_variant_set_id: variant_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Updates a variant set using patch semantics.
///
/// # Arguments
///
/// * `request` - No description provided.
/// * `variantSetId` - The ID of the variant to be updated (must already exist).
pub fn patch(&self, request: VariantSet, variant_set_id: &str) -> VariantsetPatchCall<'a, C, A> {
VariantsetPatchCall {
hub: self.hub,
_request: request,
_variant_set_id: variant_set_id.to_string(),
_update_mask: Default::default(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Returns a list of all variant sets matching search criteria.
///
/// Implements
/// [GlobalAllianceApi.searchVariantSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49).
///
/// # Arguments
///
/// * `request` - No description provided.
pub fn search(&self, request: SearchVariantSetsRequest) -> VariantsetSearchCall<'a, C, A> {
VariantsetSearchCall {
hub: self.hub,
_request: request,
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
/// Create a builder to help you perform the following task:
///
/// Gets a variant set by ID.
///
/// # Arguments
///
/// * `variantSetId` - Required. The ID of the variant set.
pub fn get(&self, variant_set_id: &str) -> VariantsetGetCall<'a, C, A> {
VariantsetGetCall {
hub: self.hub,
_variant_set_id: variant_set_id.to_string(),
_delegate: Default::default(),
_scopes: Default::default(),
_additional_params: Default::default(),
}
}
}
// ###################
// CallBuilders ###
// #################
/// Starts asynchronous cancellation on a long-running operation.
/// The server makes a best effort to cancel the operation, but success is not
/// guaranteed. Clients may use Operations.GetOperation
/// or Operations.ListOperations
/// to check whether the cancellation succeeded or the operation completed
/// despite cancellation.
/// Authorization requires the following [Google IAM](https://cloud.google.com/iam) permission&#58;
///
/// * `genomics.operations.cancel`
///
/// A builder for the *cancel* method supported by a *operation* resource.
/// It is not used directly, but through a `OperationMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::CancelOperationRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = CancelOperationRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.operations().cancel(req, "name")
/// .doit();
/// # }
/// ```
pub struct OperationCancelCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: CancelOperationRequest,
_name: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for OperationCancelCall<'a, C, A> {}
impl<'a, C, A> OperationCancelCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Empty)> {
use url::percent_encoding::{percent_encode, DEFAULT_ENCODE_SET};
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.operations.cancel",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(4 + self._additional_params.len());
params.push(("name", self._name.to_string()));
for &field in ["alt", "name"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/{+name}:cancel";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{+name}", "name")].iter() {
let mut replace_with = String::new();
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = value.to_string();
break;
}
}
if find_this.as_bytes()[1] == '+' as u8 {
replace_with = percent_encode(replace_with.as_bytes(), DEFAULT_ENCODE_SET);
}
url = url.replace(find_this, &replace_with);
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["name"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: CancelOperationRequest) -> OperationCancelCall<'a, C, A> {
self._request = new_value;
self
}
/// The name of the operation resource to be cancelled.
///
/// Sets the *name* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn name(mut self, new_value: &str) -> OperationCancelCall<'a, C, A> {
self._name = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> OperationCancelCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> OperationCancelCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> OperationCancelCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets the latest state of a long-running operation.
/// Clients can use this method to poll the operation result at intervals as
/// recommended by the API service.
/// Authorization requires the following [Google IAM](https://cloud.google.com/iam) permission&#58;
///
/// * `genomics.operations.get`
///
/// A builder for the *get* method supported by a *operation* resource.
/// It is not used directly, but through a `OperationMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.operations().get("name")
/// .doit();
/// # }
/// ```
pub struct OperationGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_name: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for OperationGetCall<'a, C, A> {}
impl<'a, C, A> OperationGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Operation)> {
use url::percent_encoding::{percent_encode, DEFAULT_ENCODE_SET};
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.operations.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("name", self._name.to_string()));
for &field in ["alt", "name"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/{+name}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{+name}", "name")].iter() {
let mut replace_with = String::new();
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = value.to_string();
break;
}
}
if find_this.as_bytes()[1] == '+' as u8 {
replace_with = percent_encode(replace_with.as_bytes(), DEFAULT_ENCODE_SET);
}
url = url.replace(find_this, &replace_with);
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["name"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The name of the operation resource.
///
/// Sets the *name* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn name(mut self, new_value: &str) -> OperationGetCall<'a, C, A> {
self._name = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> OperationGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> OperationGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> OperationGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Lists operations that match the specified filter in the request.
/// Authorization requires the following [Google IAM](https://cloud.google.com/iam) permission&#58;
///
/// * `genomics.operations.list`
///
/// A builder for the *list* method supported by a *operation* resource.
/// It is not used directly, but through a `OperationMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.operations().list("name")
/// .page_token("justo")
/// .page_size(-1)
/// .filter("erat")
/// .doit();
/// # }
/// ```
pub struct OperationListCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_name: String,
_page_token: Option<String>,
_page_size: Option<i32>,
_filter: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for OperationListCall<'a, C, A> {}
impl<'a, C, A> OperationListCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, ListOperationsResponse)> {
use url::percent_encoding::{percent_encode, DEFAULT_ENCODE_SET};
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.operations.list",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(6 + self._additional_params.len());
params.push(("name", self._name.to_string()));
if let Some(value) = self._page_token {
params.push(("pageToken", value.to_string()));
}
if let Some(value) = self._page_size {
params.push(("pageSize", value.to_string()));
}
if let Some(value) = self._filter {
params.push(("filter", value.to_string()));
}
for &field in ["alt", "name", "pageToken", "pageSize", "filter"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/{+name}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{+name}", "name")].iter() {
let mut replace_with = String::new();
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = value.to_string();
break;
}
}
if find_this.as_bytes()[1] == '+' as u8 {
replace_with = percent_encode(replace_with.as_bytes(), DEFAULT_ENCODE_SET);
}
url = url.replace(find_this, &replace_with);
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["name"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The name of the operation's parent resource.
///
/// Sets the *name* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn name(mut self, new_value: &str) -> OperationListCall<'a, C, A> {
self._name = new_value.to_string();
self
}
/// The standard list page token.
///
/// Sets the *page token* query property to the given value.
pub fn page_token(mut self, new_value: &str) -> OperationListCall<'a, C, A> {
self._page_token = Some(new_value.to_string());
self
}
/// The maximum number of results to return. If unspecified, defaults to
/// 256. The maximum value is 2048.
///
/// Sets the *page size* query property to the given value.
pub fn page_size(mut self, new_value: i32) -> OperationListCall<'a, C, A> {
self._page_size = Some(new_value);
self
}
/// A string for filtering Operations.
/// In v2alpha1, the following filter fields are supported&#58;
///
/// * createTime&#58; The time this job was created
/// * events&#58; The set of event (names) that have occurred while running
/// the pipeline. The &#58; operator can be used to determine if a
/// particular event has occurred.
/// * error&#58; If the pipeline is running, this value is NULL. Once the
/// pipeline finishes, the value is the standard Google error code.
/// * labels.key or labels."key with space" where key is a label key.
/// * done&#58; If the pipeline is running, this value is false. Once the
/// pipeline finishes, the value is true.
///
/// In v1 and v1alpha2, the following filter fields are supported&#58;
///
/// * projectId&#58; Required. Corresponds to
/// OperationMetadata.projectId.
/// * createTime&#58; The time this job was created, in seconds from the
/// [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=` and/or `<=`
/// operators.
/// * status&#58; Can be `RUNNING`, `SUCCESS`, `FAILURE`, or `CANCELED`. Only
/// one status may be specified.
/// * labels.key where key is a label key.
///
/// Examples&#58;
///
/// * `projectId = my-project AND createTime >= 1432140000`
/// * `projectId = my-project AND createTime >= 1432140000 AND createTime <= 1432150000 AND status = RUNNING`
/// * `projectId = my-project AND labels.color = *`
/// * `projectId = my-project AND labels.color = red`
///
/// Sets the *filter* query property to the given value.
pub fn filter(mut self, new_value: &str) -> OperationListCall<'a, C, A> {
self._filter = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> OperationListCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> OperationListCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> OperationListCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Creates a new dataset.
///
/// A builder for the *create* method supported by a *dataset* resource.
/// It is not used directly, but through a `DatasetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::Dataset;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = Dataset::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().create(req)
/// .doit();
/// # }
/// ```
pub struct DatasetCreateCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: Dataset,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for DatasetCreateCall<'a, C, A> {}
impl<'a, C, A> DatasetCreateCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Dataset)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.datasets.create",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/datasets";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: Dataset) -> DatasetCreateCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> DatasetCreateCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> DatasetCreateCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> DatasetCreateCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Deletes a dataset and all of its contents (all read group sets,
/// reference sets, variant sets, call sets, annotation sets, etc.)
/// This is reversible (up to one week after the deletion) via
/// the
/// datasets.undelete
/// operation.
///
/// A builder for the *delete* method supported by a *dataset* resource.
/// It is not used directly, but through a `DatasetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().delete("datasetId")
/// .doit();
/// # }
/// ```
pub struct DatasetDeleteCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_dataset_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for DatasetDeleteCall<'a, C, A> {}
impl<'a, C, A> DatasetDeleteCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Empty)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.datasets.delete",
http_method: hyper::method::Method::Delete });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("datasetId", self._dataset_id.to_string()));
for &field in ["alt", "datasetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/datasets/{datasetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{datasetId}", "datasetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["datasetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Delete, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the dataset to be deleted.
///
/// Sets the *dataset id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn dataset_id(mut self, new_value: &str) -> DatasetDeleteCall<'a, C, A> {
self._dataset_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> DatasetDeleteCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> DatasetDeleteCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> DatasetDeleteCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Undeletes a dataset by restoring a dataset which was deleted via this API.
///
/// This operation is only possible for a week after the deletion occurred.
///
/// A builder for the *undelete* method supported by a *dataset* resource.
/// It is not used directly, but through a `DatasetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::UndeleteDatasetRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = UndeleteDatasetRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().undelete(req, "datasetId")
/// .doit();
/// # }
/// ```
pub struct DatasetUndeleteCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: UndeleteDatasetRequest,
_dataset_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for DatasetUndeleteCall<'a, C, A> {}
impl<'a, C, A> DatasetUndeleteCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Dataset)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.datasets.undelete",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(4 + self._additional_params.len());
params.push(("datasetId", self._dataset_id.to_string()));
for &field in ["alt", "datasetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/datasets/{datasetId}:undelete";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{datasetId}", "datasetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["datasetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: UndeleteDatasetRequest) -> DatasetUndeleteCall<'a, C, A> {
self._request = new_value;
self
}
/// The ID of the dataset to be undeleted.
///
/// Sets the *dataset id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn dataset_id(mut self, new_value: &str) -> DatasetUndeleteCall<'a, C, A> {
self._dataset_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> DatasetUndeleteCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> DatasetUndeleteCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> DatasetUndeleteCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Sets the access control policy on the specified dataset. Replaces any
/// existing policy.
///
/// See <a href="/iam/docs/managing-policies#setting_a_policy">Setting a
/// Policy</a> for more information.
///
/// A builder for the *setIamPolicy* method supported by a *dataset* resource.
/// It is not used directly, but through a `DatasetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SetIamPolicyRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SetIamPolicyRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().set_iam_policy(req, "resource")
/// .doit();
/// # }
/// ```
pub struct DatasetSetIamPolicyCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SetIamPolicyRequest,
_resource: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for DatasetSetIamPolicyCall<'a, C, A> {}
impl<'a, C, A> DatasetSetIamPolicyCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Policy)> {
use url::percent_encoding::{percent_encode, DEFAULT_ENCODE_SET};
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.datasets.setIamPolicy",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(4 + self._additional_params.len());
params.push(("resource", self._resource.to_string()));
for &field in ["alt", "resource"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/{+resource}:setIamPolicy";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{+resource}", "resource")].iter() {
let mut replace_with = String::new();
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = value.to_string();
break;
}
}
if find_this.as_bytes()[1] == '+' as u8 {
replace_with = percent_encode(replace_with.as_bytes(), DEFAULT_ENCODE_SET);
}
url = url.replace(find_this, &replace_with);
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["resource"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SetIamPolicyRequest) -> DatasetSetIamPolicyCall<'a, C, A> {
self._request = new_value;
self
}
/// REQUIRED: The resource for which policy is being specified. Format is
/// `datasets/<dataset ID>`.
///
/// Sets the *resource* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn resource(mut self, new_value: &str) -> DatasetSetIamPolicyCall<'a, C, A> {
self._resource = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> DatasetSetIamPolicyCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> DatasetSetIamPolicyCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> DatasetSetIamPolicyCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Returns permissions that a caller has on the specified resource.
/// See <a href="/iam/docs/managing-policies#testing_permissions">Testing
/// Permissions</a> for more information.
///
/// A builder for the *testIamPermissions* method supported by a *dataset* resource.
/// It is not used directly, but through a `DatasetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::TestIamPermissionsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = TestIamPermissionsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().test_iam_permissions(req, "resource")
/// .doit();
/// # }
/// ```
pub struct DatasetTestIamPermissionCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: TestIamPermissionsRequest,
_resource: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for DatasetTestIamPermissionCall<'a, C, A> {}
impl<'a, C, A> DatasetTestIamPermissionCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, TestIamPermissionsResponse)> {
use url::percent_encoding::{percent_encode, DEFAULT_ENCODE_SET};
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.datasets.testIamPermissions",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(4 + self._additional_params.len());
params.push(("resource", self._resource.to_string()));
for &field in ["alt", "resource"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/{+resource}:testIamPermissions";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{+resource}", "resource")].iter() {
let mut replace_with = String::new();
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = value.to_string();
break;
}
}
if find_this.as_bytes()[1] == '+' as u8 {
replace_with = percent_encode(replace_with.as_bytes(), DEFAULT_ENCODE_SET);
}
url = url.replace(find_this, &replace_with);
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["resource"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: TestIamPermissionsRequest) -> DatasetTestIamPermissionCall<'a, C, A> {
self._request = new_value;
self
}
/// REQUIRED: The resource for which policy is being specified. Format is
/// `datasets/<dataset ID>`.
///
/// Sets the *resource* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn resource(mut self, new_value: &str) -> DatasetTestIamPermissionCall<'a, C, A> {
self._resource = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> DatasetTestIamPermissionCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> DatasetTestIamPermissionCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> DatasetTestIamPermissionCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a dataset by ID.
///
/// A builder for the *get* method supported by a *dataset* resource.
/// It is not used directly, but through a `DatasetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().get("datasetId")
/// .doit();
/// # }
/// ```
pub struct DatasetGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_dataset_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for DatasetGetCall<'a, C, A> {}
impl<'a, C, A> DatasetGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Dataset)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.datasets.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("datasetId", self._dataset_id.to_string()));
for &field in ["alt", "datasetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/datasets/{datasetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{datasetId}", "datasetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["datasetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the dataset.
///
/// Sets the *dataset id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn dataset_id(mut self, new_value: &str) -> DatasetGetCall<'a, C, A> {
self._dataset_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> DatasetGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> DatasetGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> DatasetGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Lists datasets within a project.
///
/// A builder for the *list* method supported by a *dataset* resource.
/// It is not used directly, but through a `DatasetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().list()
/// .project_id("sadipscing")
/// .page_token("aliquyam")
/// .page_size(-66)
/// .doit();
/// # }
/// ```
pub struct DatasetListCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_project_id: Option<String>,
_page_token: Option<String>,
_page_size: Option<i32>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for DatasetListCall<'a, C, A> {}
impl<'a, C, A> DatasetListCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, ListDatasetsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.datasets.list",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(5 + self._additional_params.len());
if let Some(value) = self._project_id {
params.push(("projectId", value.to_string()));
}
if let Some(value) = self._page_token {
params.push(("pageToken", value.to_string()));
}
if let Some(value) = self._page_size {
params.push(("pageSize", value.to_string()));
}
for &field in ["alt", "projectId", "pageToken", "pageSize"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/datasets";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// Required. The Google Cloud project ID to list datasets for.
///
/// Sets the *project id* query property to the given value.
pub fn project_id(mut self, new_value: &str) -> DatasetListCall<'a, C, A> {
self._project_id = Some(new_value.to_string());
self
}
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
///
/// Sets the *page token* query property to the given value.
pub fn page_token(mut self, new_value: &str) -> DatasetListCall<'a, C, A> {
self._page_token = Some(new_value.to_string());
self
}
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 50. The maximum value is 1024.
///
/// Sets the *page size* query property to the given value.
pub fn page_size(mut self, new_value: i32) -> DatasetListCall<'a, C, A> {
self._page_size = Some(new_value);
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> DatasetListCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> DatasetListCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> DatasetListCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets the access control policy for the dataset. This is empty if the
/// policy or resource does not exist.
///
/// See <a href="/iam/docs/managing-policies#getting_a_policy">Getting a
/// Policy</a> for more information.
///
/// A builder for the *getIamPolicy* method supported by a *dataset* resource.
/// It is not used directly, but through a `DatasetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::GetIamPolicyRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = GetIamPolicyRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().get_iam_policy(req, "resource")
/// .doit();
/// # }
/// ```
pub struct DatasetGetIamPolicyCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: GetIamPolicyRequest,
_resource: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for DatasetGetIamPolicyCall<'a, C, A> {}
impl<'a, C, A> DatasetGetIamPolicyCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Policy)> {
use url::percent_encoding::{percent_encode, DEFAULT_ENCODE_SET};
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.datasets.getIamPolicy",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(4 + self._additional_params.len());
params.push(("resource", self._resource.to_string()));
for &field in ["alt", "resource"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/{+resource}:getIamPolicy";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{+resource}", "resource")].iter() {
let mut replace_with = String::new();
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = value.to_string();
break;
}
}
if find_this.as_bytes()[1] == '+' as u8 {
replace_with = percent_encode(replace_with.as_bytes(), DEFAULT_ENCODE_SET);
}
url = url.replace(find_this, &replace_with);
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["resource"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: GetIamPolicyRequest) -> DatasetGetIamPolicyCall<'a, C, A> {
self._request = new_value;
self
}
/// REQUIRED: The resource for which policy is being specified. Format is
/// `datasets/<dataset ID>`.
///
/// Sets the *resource* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn resource(mut self, new_value: &str) -> DatasetGetIamPolicyCall<'a, C, A> {
self._resource = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> DatasetGetIamPolicyCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> DatasetGetIamPolicyCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> DatasetGetIamPolicyCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Updates a dataset.
///
/// This method supports patch semantics.
///
/// A builder for the *patch* method supported by a *dataset* resource.
/// It is not used directly, but through a `DatasetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::Dataset;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = Dataset::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.datasets().patch(req, "datasetId")
/// .update_mask("justo")
/// .doit();
/// # }
/// ```
pub struct DatasetPatchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: Dataset,
_dataset_id: String,
_update_mask: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for DatasetPatchCall<'a, C, A> {}
impl<'a, C, A> DatasetPatchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Dataset)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.datasets.patch",
http_method: hyper::method::Method::Patch });
let mut params: Vec<(&str, String)> = Vec::with_capacity(5 + self._additional_params.len());
params.push(("datasetId", self._dataset_id.to_string()));
if let Some(value) = self._update_mask {
params.push(("updateMask", value.to_string()));
}
for &field in ["alt", "datasetId", "updateMask"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/datasets/{datasetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{datasetId}", "datasetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["datasetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Patch, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: Dataset) -> DatasetPatchCall<'a, C, A> {
self._request = new_value;
self
}
/// The ID of the dataset to be updated.
///
/// Sets the *dataset id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn dataset_id(mut self, new_value: &str) -> DatasetPatchCall<'a, C, A> {
self._dataset_id = new_value.to_string();
self
}
/// An optional mask specifying which fields to update. At this time, the only
/// mutable field is name. The only
/// acceptable value is "name". If unspecified, all mutable fields will be
/// updated.
///
/// Sets the *update mask* query property to the given value.
pub fn update_mask(mut self, new_value: &str) -> DatasetPatchCall<'a, C, A> {
self._update_mask = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> DatasetPatchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> DatasetPatchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> DatasetPatchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Searches for reference sets which match the given criteria.
///
/// Implements
/// [GlobalAllianceApi.searchReferenceSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L71)
///
/// A builder for the *search* method supported by a *referenceset* resource.
/// It is not used directly, but through a `ReferencesetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SearchReferenceSetsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SearchReferenceSetsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.referencesets().search(req)
/// .doit();
/// # }
/// ```
pub struct ReferencesetSearchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SearchReferenceSetsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReferencesetSearchCall<'a, C, A> {}
impl<'a, C, A> ReferencesetSearchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, SearchReferenceSetsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.referencesets.search",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/referencesets/search";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SearchReferenceSetsRequest) -> ReferencesetSearchCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReferencesetSearchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReferencesetSearchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReferencesetSearchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a reference set.
///
/// Implements
/// [GlobalAllianceApi.getReferenceSet](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L83).
///
/// A builder for the *get* method supported by a *referenceset* resource.
/// It is not used directly, but through a `ReferencesetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.referencesets().get("referenceSetId")
/// .doit();
/// # }
/// ```
pub struct ReferencesetGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_reference_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReferencesetGetCall<'a, C, A> {}
impl<'a, C, A> ReferencesetGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, ReferenceSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.referencesets.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("referenceSetId", self._reference_set_id.to_string()));
for &field in ["alt", "referenceSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/referencesets/{referenceSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{referenceSetId}", "referenceSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["referenceSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the reference set.
///
/// Sets the *reference set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn reference_set_id(mut self, new_value: &str) -> ReferencesetGetCall<'a, C, A> {
self._reference_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReferencesetGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReferencesetGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReferencesetGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a list of call sets matching the criteria.
///
/// Implements
/// [GlobalAllianceApi.searchCallSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L178).
///
/// A builder for the *search* method supported by a *callset* resource.
/// It is not used directly, but through a `CallsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SearchCallSetsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SearchCallSetsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.callsets().search(req)
/// .doit();
/// # }
/// ```
pub struct CallsetSearchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SearchCallSetsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for CallsetSearchCall<'a, C, A> {}
impl<'a, C, A> CallsetSearchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, SearchCallSetsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.callsets.search",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/callsets/search";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SearchCallSetsRequest) -> CallsetSearchCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> CallsetSearchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> CallsetSearchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> CallsetSearchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Updates a call set.
///
/// This method supports patch semantics.
///
/// A builder for the *patch* method supported by a *callset* resource.
/// It is not used directly, but through a `CallsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::CallSet;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = CallSet::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.callsets().patch(req, "callSetId")
/// .update_mask("diam")
/// .doit();
/// # }
/// ```
pub struct CallsetPatchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: CallSet,
_call_set_id: String,
_update_mask: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for CallsetPatchCall<'a, C, A> {}
impl<'a, C, A> CallsetPatchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, CallSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.callsets.patch",
http_method: hyper::method::Method::Patch });
let mut params: Vec<(&str, String)> = Vec::with_capacity(5 + self._additional_params.len());
params.push(("callSetId", self._call_set_id.to_string()));
if let Some(value) = self._update_mask {
params.push(("updateMask", value.to_string()));
}
for &field in ["alt", "callSetId", "updateMask"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/callsets/{callSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{callSetId}", "callSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["callSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Patch, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: CallSet) -> CallsetPatchCall<'a, C, A> {
self._request = new_value;
self
}
/// The ID of the call set to be updated.
///
/// Sets the *call set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn call_set_id(mut self, new_value: &str) -> CallsetPatchCall<'a, C, A> {
self._call_set_id = new_value.to_string();
self
}
/// An optional mask specifying which fields to update. At this time, the only
/// mutable field is name. The only
/// acceptable value is "name". If unspecified, all mutable fields will be
/// updated.
///
/// Sets the *update mask* query property to the given value.
pub fn update_mask(mut self, new_value: &str) -> CallsetPatchCall<'a, C, A> {
self._update_mask = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> CallsetPatchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> CallsetPatchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> CallsetPatchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Creates a new call set.
///
/// A builder for the *create* method supported by a *callset* resource.
/// It is not used directly, but through a `CallsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::CallSet;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = CallSet::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.callsets().create(req)
/// .doit();
/// # }
/// ```
pub struct CallsetCreateCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: CallSet,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for CallsetCreateCall<'a, C, A> {}
impl<'a, C, A> CallsetCreateCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, CallSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.callsets.create",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/callsets";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: CallSet) -> CallsetCreateCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> CallsetCreateCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> CallsetCreateCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> CallsetCreateCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Deletes a call set.
///
/// A builder for the *delete* method supported by a *callset* resource.
/// It is not used directly, but through a `CallsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.callsets().delete("callSetId")
/// .doit();
/// # }
/// ```
pub struct CallsetDeleteCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_call_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for CallsetDeleteCall<'a, C, A> {}
impl<'a, C, A> CallsetDeleteCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Empty)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.callsets.delete",
http_method: hyper::method::Method::Delete });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("callSetId", self._call_set_id.to_string()));
for &field in ["alt", "callSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/callsets/{callSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{callSetId}", "callSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["callSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Delete, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the call set to be deleted.
///
/// Sets the *call set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn call_set_id(mut self, new_value: &str) -> CallsetDeleteCall<'a, C, A> {
self._call_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> CallsetDeleteCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> CallsetDeleteCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> CallsetDeleteCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a call set by ID.
///
/// A builder for the *get* method supported by a *callset* resource.
/// It is not used directly, but through a `CallsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.callsets().get("callSetId")
/// .doit();
/// # }
/// ```
pub struct CallsetGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_call_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for CallsetGetCall<'a, C, A> {}
impl<'a, C, A> CallsetGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, CallSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.callsets.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("callSetId", self._call_set_id.to_string()));
for &field in ["alt", "callSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/callsets/{callSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{callSetId}", "callSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["callSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the call set.
///
/// Sets the *call set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn call_set_id(mut self, new_value: &str) -> CallsetGetCall<'a, C, A> {
self._call_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> CallsetGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> CallsetGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> CallsetGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a list of reads for one or more read group sets.
///
/// Reads search operates over a genomic coordinate space of reference sequence
/// & position defined over the reference sequences to which the requested
/// read group sets are aligned.
///
/// If a target positional range is specified, search returns all reads whose
/// alignment to the reference genome overlap the range. A query which
/// specifies only read group set IDs yields all reads in those read group
/// sets, including unmapped reads.
///
/// All reads returned (including reads on subsequent pages) are ordered by
/// genomic coordinate (by reference sequence, then position). Reads with
/// equivalent genomic coordinates are returned in an unspecified order. This
/// order is consistent, such that two queries for the same content (regardless
/// of page size) yield reads in the same order across their respective streams
/// of paginated responses.
///
/// Implements
/// [GlobalAllianceApi.searchReads](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L85).
///
/// A builder for the *search* method supported by a *read* resource.
/// It is not used directly, but through a `ReadMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SearchReadsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SearchReadsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.reads().search(req)
/// .doit();
/// # }
/// ```
pub struct ReadSearchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SearchReadsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReadSearchCall<'a, C, A> {}
impl<'a, C, A> ReadSearchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, SearchReadsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.reads.search",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/reads/search";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SearchReadsRequest) -> ReadSearchCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReadSearchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReadSearchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReadSearchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Exports a read group set to a BAM file in Google Cloud Storage.
///
/// Note that currently there may be some differences between exported BAM
/// files and the original BAM file at the time of import. See
/// ImportReadGroupSets
/// for caveats.
///
/// A builder for the *export* method supported by a *readgroupset* resource.
/// It is not used directly, but through a `ReadgroupsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::ExportReadGroupSetRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = ExportReadGroupSetRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.readgroupsets().export(req, "readGroupSetId")
/// .doit();
/// # }
/// ```
pub struct ReadgroupsetExportCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: ExportReadGroupSetRequest,
_read_group_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReadgroupsetExportCall<'a, C, A> {}
impl<'a, C, A> ReadgroupsetExportCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Operation)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.readgroupsets.export",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(4 + self._additional_params.len());
params.push(("readGroupSetId", self._read_group_set_id.to_string()));
for &field in ["alt", "readGroupSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/readgroupsets/{readGroupSetId}:export";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{readGroupSetId}", "readGroupSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["readGroupSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: ExportReadGroupSetRequest) -> ReadgroupsetExportCall<'a, C, A> {
self._request = new_value;
self
}
/// Required. The ID of the read group set to export. The caller must have
/// READ access to this read group set.
///
/// Sets the *read group set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn read_group_set_id(mut self, new_value: &str) -> ReadgroupsetExportCall<'a, C, A> {
self._read_group_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReadgroupsetExportCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReadgroupsetExportCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReadgroupsetExportCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Creates read group sets by asynchronously importing the provided
/// information.
///
/// The caller must have WRITE permissions to the dataset.
///
/// ## Notes on [BAM](https://samtools.github.io/hts-specs/SAMv1.pdf) import
///
/// - Tags will be converted to strings - tag types are not preserved
/// - Comments (`@CO`) in the input file header will not be preserved
/// - Original header order of references (`@SQ`) will not be preserved
/// - Any reverse stranded unmapped reads will be reverse complemented, and
/// their qualities (also the "BQ" and "OQ" tags, if any) will be reversed
/// - Unmapped reads will be stripped of positional information (reference name
/// and position)
///
/// A builder for the *import* method supported by a *readgroupset* resource.
/// It is not used directly, but through a `ReadgroupsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::ImportReadGroupSetsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = ImportReadGroupSetsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.readgroupsets().import(req)
/// .doit();
/// # }
/// ```
pub struct ReadgroupsetImportCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: ImportReadGroupSetsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReadgroupsetImportCall<'a, C, A> {}
impl<'a, C, A> ReadgroupsetImportCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Operation)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.readgroupsets.import",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/readgroupsets:import";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: ImportReadGroupSetsRequest) -> ReadgroupsetImportCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReadgroupsetImportCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReadgroupsetImportCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReadgroupsetImportCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Updates a read group set.
///
/// This method supports patch semantics.
///
/// A builder for the *patch* method supported by a *readgroupset* resource.
/// It is not used directly, but through a `ReadgroupsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::ReadGroupSet;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = ReadGroupSet::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.readgroupsets().patch(req, "readGroupSetId")
/// .update_mask("aliquyam")
/// .doit();
/// # }
/// ```
pub struct ReadgroupsetPatchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: ReadGroupSet,
_read_group_set_id: String,
_update_mask: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReadgroupsetPatchCall<'a, C, A> {}
impl<'a, C, A> ReadgroupsetPatchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, ReadGroupSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.readgroupsets.patch",
http_method: hyper::method::Method::Patch });
let mut params: Vec<(&str, String)> = Vec::with_capacity(5 + self._additional_params.len());
params.push(("readGroupSetId", self._read_group_set_id.to_string()));
if let Some(value) = self._update_mask {
params.push(("updateMask", value.to_string()));
}
for &field in ["alt", "readGroupSetId", "updateMask"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/readgroupsets/{readGroupSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{readGroupSetId}", "readGroupSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["readGroupSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Patch, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: ReadGroupSet) -> ReadgroupsetPatchCall<'a, C, A> {
self._request = new_value;
self
}
/// The ID of the read group set to be updated. The caller must have WRITE
/// permissions to the dataset associated with this read group set.
///
/// Sets the *read group set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn read_group_set_id(mut self, new_value: &str) -> ReadgroupsetPatchCall<'a, C, A> {
self._read_group_set_id = new_value.to_string();
self
}
/// An optional mask specifying which fields to update. Supported fields:
///
/// * name.
/// * referenceSetId.
///
/// Leaving `updateMask` unset is equivalent to specifying all mutable
/// fields.
///
/// Sets the *update mask* query property to the given value.
pub fn update_mask(mut self, new_value: &str) -> ReadgroupsetPatchCall<'a, C, A> {
self._update_mask = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReadgroupsetPatchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReadgroupsetPatchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReadgroupsetPatchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a read group set by ID.
///
/// A builder for the *get* method supported by a *readgroupset* resource.
/// It is not used directly, but through a `ReadgroupsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.readgroupsets().get("readGroupSetId")
/// .doit();
/// # }
/// ```
pub struct ReadgroupsetGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_read_group_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReadgroupsetGetCall<'a, C, A> {}
impl<'a, C, A> ReadgroupsetGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, ReadGroupSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.readgroupsets.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("readGroupSetId", self._read_group_set_id.to_string()));
for &field in ["alt", "readGroupSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/readgroupsets/{readGroupSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{readGroupSetId}", "readGroupSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["readGroupSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the read group set.
///
/// Sets the *read group set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn read_group_set_id(mut self, new_value: &str) -> ReadgroupsetGetCall<'a, C, A> {
self._read_group_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReadgroupsetGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReadgroupsetGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReadgroupsetGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Lists fixed width coverage buckets for a read group set, each of which
/// correspond to a range of a reference sequence. Each bucket summarizes
/// coverage information across its corresponding genomic range.
///
/// Coverage is defined as the number of reads which are aligned to a given
/// base in the reference sequence. Coverage buckets are available at several
/// precomputed bucket widths, enabling retrieval of various coverage 'zoom
/// levels'. The caller must have READ permissions for the target read group
/// set.
///
/// A builder for the *coveragebuckets.list* method supported by a *readgroupset* resource.
/// It is not used directly, but through a `ReadgroupsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.readgroupsets().coveragebuckets_list("readGroupSetId")
/// .target_bucket_width("eos")
/// .start("erat")
/// .reference_name("sadipscing")
/// .page_token("dolor")
/// .page_size(-39)
/// .end("elitr")
/// .doit();
/// # }
/// ```
pub struct ReadgroupsetCoveragebucketListCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_read_group_set_id: String,
_target_bucket_width: Option<String>,
_start: Option<String>,
_reference_name: Option<String>,
_page_token: Option<String>,
_page_size: Option<i32>,
_end: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReadgroupsetCoveragebucketListCall<'a, C, A> {}
impl<'a, C, A> ReadgroupsetCoveragebucketListCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, ListCoverageBucketsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.readgroupsets.coveragebuckets.list",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(9 + self._additional_params.len());
params.push(("readGroupSetId", self._read_group_set_id.to_string()));
if let Some(value) = self._target_bucket_width {
params.push(("targetBucketWidth", value.to_string()));
}
if let Some(value) = self._start {
params.push(("start", value.to_string()));
}
if let Some(value) = self._reference_name {
params.push(("referenceName", value.to_string()));
}
if let Some(value) = self._page_token {
params.push(("pageToken", value.to_string()));
}
if let Some(value) = self._page_size {
params.push(("pageSize", value.to_string()));
}
if let Some(value) = self._end {
params.push(("end", value.to_string()));
}
for &field in ["alt", "readGroupSetId", "targetBucketWidth", "start", "referenceName", "pageToken", "pageSize", "end"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/readgroupsets/{readGroupSetId}/coveragebuckets";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{readGroupSetId}", "readGroupSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["readGroupSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// Required. The ID of the read group set over which coverage is requested.
///
/// Sets the *read group set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn read_group_set_id(mut self, new_value: &str) -> ReadgroupsetCoveragebucketListCall<'a, C, A> {
self._read_group_set_id = new_value.to_string();
self
}
/// The desired width of each reported coverage bucket in base pairs. This
/// will be rounded down to the nearest precomputed bucket width; the value
/// of which is returned as `bucketWidth` in the response. Defaults
/// to infinity (each bucket spans an entire reference sequence) or the length
/// of the target range, if specified. The smallest precomputed
/// `bucketWidth` is currently 2048 base pairs; this is subject to
/// change.
///
/// Sets the *target bucket width* query property to the given value.
pub fn target_bucket_width(mut self, new_value: &str) -> ReadgroupsetCoveragebucketListCall<'a, C, A> {
self._target_bucket_width = Some(new_value.to_string());
self
}
/// The start position of the range on the reference, 0-based inclusive. If
/// specified, `referenceName` must also be specified. Defaults to 0.
///
/// Sets the *start* query property to the given value.
pub fn start(mut self, new_value: &str) -> ReadgroupsetCoveragebucketListCall<'a, C, A> {
self._start = Some(new_value.to_string());
self
}
/// The name of the reference to query, within the reference set associated
/// with this query. Optional.
///
/// Sets the *reference name* query property to the given value.
pub fn reference_name(mut self, new_value: &str) -> ReadgroupsetCoveragebucketListCall<'a, C, A> {
self._reference_name = Some(new_value.to_string());
self
}
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
///
/// Sets the *page token* query property to the given value.
pub fn page_token(mut self, new_value: &str) -> ReadgroupsetCoveragebucketListCall<'a, C, A> {
self._page_token = Some(new_value.to_string());
self
}
/// The maximum number of results to return in a single page. If unspecified,
/// defaults to 1024. The maximum value is 2048.
///
/// Sets the *page size* query property to the given value.
pub fn page_size(mut self, new_value: i32) -> ReadgroupsetCoveragebucketListCall<'a, C, A> {
self._page_size = Some(new_value);
self
}
/// The end position of the range on the reference, 0-based exclusive. If
/// specified, `referenceName` must also be specified. If unset or 0, defaults
/// to the length of the reference.
///
/// Sets the *end* query property to the given value.
pub fn end(mut self, new_value: &str) -> ReadgroupsetCoveragebucketListCall<'a, C, A> {
self._end = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReadgroupsetCoveragebucketListCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReadgroupsetCoveragebucketListCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReadgroupsetCoveragebucketListCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Deletes a read group set.
///
/// A builder for the *delete* method supported by a *readgroupset* resource.
/// It is not used directly, but through a `ReadgroupsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.readgroupsets().delete("readGroupSetId")
/// .doit();
/// # }
/// ```
pub struct ReadgroupsetDeleteCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_read_group_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReadgroupsetDeleteCall<'a, C, A> {}
impl<'a, C, A> ReadgroupsetDeleteCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Empty)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.readgroupsets.delete",
http_method: hyper::method::Method::Delete });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("readGroupSetId", self._read_group_set_id.to_string()));
for &field in ["alt", "readGroupSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/readgroupsets/{readGroupSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{readGroupSetId}", "readGroupSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["readGroupSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Delete, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the read group set to be deleted. The caller must have WRITE
/// permissions to the dataset associated with this read group set.
///
/// Sets the *read group set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn read_group_set_id(mut self, new_value: &str) -> ReadgroupsetDeleteCall<'a, C, A> {
self._read_group_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReadgroupsetDeleteCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReadgroupsetDeleteCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReadgroupsetDeleteCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Searches for read group sets matching the criteria.
///
/// Implements
/// [GlobalAllianceApi.searchReadGroupSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/readmethods.avdl#L135).
///
/// A builder for the *search* method supported by a *readgroupset* resource.
/// It is not used directly, but through a `ReadgroupsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SearchReadGroupSetsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SearchReadGroupSetsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.readgroupsets().search(req)
/// .doit();
/// # }
/// ```
pub struct ReadgroupsetSearchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SearchReadGroupSetsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReadgroupsetSearchCall<'a, C, A> {}
impl<'a, C, A> ReadgroupsetSearchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, SearchReadGroupSetsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.readgroupsets.search",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/readgroupsets/search";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SearchReadGroupSetsRequest) -> ReadgroupsetSearchCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReadgroupsetSearchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReadgroupsetSearchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReadgroupsetSearchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Lists the bases in a reference, optionally restricted to a range.
///
/// Implements
/// [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
///
/// A builder for the *bases.list* method supported by a *reference* resource.
/// It is not used directly, but through a `ReferenceMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.references().bases_list("referenceId")
/// .start("labore")
/// .page_token("eirmod")
/// .page_size(-33)
/// .end("invidunt")
/// .doit();
/// # }
/// ```
pub struct ReferenceBaseListCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_reference_id: String,
_start: Option<String>,
_page_token: Option<String>,
_page_size: Option<i32>,
_end: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReferenceBaseListCall<'a, C, A> {}
impl<'a, C, A> ReferenceBaseListCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, ListBasesResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.references.bases.list",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(7 + self._additional_params.len());
params.push(("referenceId", self._reference_id.to_string()));
if let Some(value) = self._start {
params.push(("start", value.to_string()));
}
if let Some(value) = self._page_token {
params.push(("pageToken", value.to_string()));
}
if let Some(value) = self._page_size {
params.push(("pageSize", value.to_string()));
}
if let Some(value) = self._end {
params.push(("end", value.to_string()));
}
for &field in ["alt", "referenceId", "start", "pageToken", "pageSize", "end"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/references/{referenceId}/bases";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{referenceId}", "referenceId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["referenceId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the reference.
///
/// Sets the *reference id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn reference_id(mut self, new_value: &str) -> ReferenceBaseListCall<'a, C, A> {
self._reference_id = new_value.to_string();
self
}
/// The start position (0-based) of this query. Defaults to 0.
///
/// Sets the *start* query property to the given value.
pub fn start(mut self, new_value: &str) -> ReferenceBaseListCall<'a, C, A> {
self._start = Some(new_value.to_string());
self
}
/// The continuation token, which is used to page through large result sets.
/// To get the next page of results, set this parameter to the value of
/// `nextPageToken` from the previous response.
///
/// Sets the *page token* query property to the given value.
pub fn page_token(mut self, new_value: &str) -> ReferenceBaseListCall<'a, C, A> {
self._page_token = Some(new_value.to_string());
self
}
/// The maximum number of bases to return in a single page. If unspecified,
/// defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
/// pairs).
///
/// Sets the *page size* query property to the given value.
pub fn page_size(mut self, new_value: i32) -> ReferenceBaseListCall<'a, C, A> {
self._page_size = Some(new_value);
self
}
/// The end position (0-based, exclusive) of this query. Defaults to the length
/// of this reference.
///
/// Sets the *end* query property to the given value.
pub fn end(mut self, new_value: &str) -> ReferenceBaseListCall<'a, C, A> {
self._end = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReferenceBaseListCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReferenceBaseListCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReferenceBaseListCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Searches for references which match the given criteria.
///
/// Implements
/// [GlobalAllianceApi.searchReferences](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L146).
///
/// A builder for the *search* method supported by a *reference* resource.
/// It is not used directly, but through a `ReferenceMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SearchReferencesRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SearchReferencesRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.references().search(req)
/// .doit();
/// # }
/// ```
pub struct ReferenceSearchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SearchReferencesRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReferenceSearchCall<'a, C, A> {}
impl<'a, C, A> ReferenceSearchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, SearchReferencesResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.references.search",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/references/search";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SearchReferencesRequest) -> ReferenceSearchCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReferenceSearchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReferenceSearchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReferenceSearchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a reference.
///
/// Implements
/// [GlobalAllianceApi.getReference](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L158).
///
/// A builder for the *get* method supported by a *reference* resource.
/// It is not used directly, but through a `ReferenceMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.references().get("referenceId")
/// .doit();
/// # }
/// ```
pub struct ReferenceGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_reference_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for ReferenceGetCall<'a, C, A> {}
impl<'a, C, A> ReferenceGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Reference)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.references.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("referenceId", self._reference_id.to_string()));
for &field in ["alt", "referenceId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/references/{referenceId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{referenceId}", "referenceId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["referenceId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the reference.
///
/// Sets the *reference id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn reference_id(mut self, new_value: &str) -> ReferenceGetCall<'a, C, A> {
self._reference_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> ReferenceGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> ReferenceGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> ReferenceGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a list of variants matching the criteria.
///
/// Implements
/// [GlobalAllianceApi.searchVariants](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L126).
///
/// A builder for the *search* method supported by a *variant* resource.
/// It is not used directly, but through a `VariantMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SearchVariantsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SearchVariantsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variants().search(req)
/// .doit();
/// # }
/// ```
pub struct VariantSearchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SearchVariantsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantSearchCall<'a, C, A> {}
impl<'a, C, A> VariantSearchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, SearchVariantsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variants.search",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variants/search";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SearchVariantsRequest) -> VariantSearchCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantSearchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantSearchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantSearchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Deletes a variant.
///
/// A builder for the *delete* method supported by a *variant* resource.
/// It is not used directly, but through a `VariantMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variants().delete("variantId")
/// .doit();
/// # }
/// ```
pub struct VariantDeleteCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_variant_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantDeleteCall<'a, C, A> {}
impl<'a, C, A> VariantDeleteCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Empty)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variants.delete",
http_method: hyper::method::Method::Delete });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("variantId", self._variant_id.to_string()));
for &field in ["alt", "variantId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variants/{variantId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{variantId}", "variantId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["variantId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Delete, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the variant to be deleted.
///
/// Sets the *variant id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn variant_id(mut self, new_value: &str) -> VariantDeleteCall<'a, C, A> {
self._variant_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantDeleteCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantDeleteCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantDeleteCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a variant by ID.
///
/// A builder for the *get* method supported by a *variant* resource.
/// It is not used directly, but through a `VariantMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variants().get("variantId")
/// .doit();
/// # }
/// ```
pub struct VariantGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_variant_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantGetCall<'a, C, A> {}
impl<'a, C, A> VariantGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Variant)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variants.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("variantId", self._variant_id.to_string()));
for &field in ["alt", "variantId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variants/{variantId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{variantId}", "variantId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["variantId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the variant.
///
/// Sets the *variant id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn variant_id(mut self, new_value: &str) -> VariantGetCall<'a, C, A> {
self._variant_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Merges the given variants with existing variants.
///
/// Each variant will be
/// merged with an existing variant that matches its reference sequence,
/// start, end, reference bases, and alternative bases. If no such variant
/// exists, a new one will be created.
///
/// When variants are merged, the call information from the new variant
/// is added to the existing variant. Variant info fields are merged as
/// specified in the
/// infoMergeConfig
/// field of the MergeVariantsRequest.
///
/// Please exercise caution when using this method! It is easy to introduce
/// mistakes in existing variants and difficult to back out of them. For
/// example,
/// suppose you were trying to merge a new variant with an existing one and
/// both
/// variants contain calls that belong to callsets with the same callset ID.
///
/// // Existing variant - irrelevant fields trimmed for clarity
/// {
/// "variantSetId": "10473108253681171589",
/// "referenceName": "1",
/// "start": "10582",
/// "referenceBases": "G",
/// "alternateBases": [
/// "A"
/// ],
/// "calls": [
/// {
/// "callSetId": "10473108253681171589-0",
/// "callSetName": "CALLSET0",
/// "genotype": [
/// 0,
/// 1
/// ],
/// }
/// ]
/// }
///
/// // New variant with conflicting call information
/// {
/// "variantSetId": "10473108253681171589",
/// "referenceName": "1",
/// "start": "10582",
/// "referenceBases": "G",
/// "alternateBases": [
/// "A"
/// ],
/// "calls": [
/// {
/// "callSetId": "10473108253681171589-0",
/// "callSetName": "CALLSET0",
/// "genotype": [
/// 1,
/// 1
/// ],
/// }
/// ]
/// }
///
/// The resulting merged variant would overwrite the existing calls with those
/// from the new variant:
///
/// {
/// "variantSetId": "10473108253681171589",
/// "referenceName": "1",
/// "start": "10582",
/// "referenceBases": "G",
/// "alternateBases": [
/// "A"
/// ],
/// "calls": [
/// {
/// "callSetId": "10473108253681171589-0",
/// "callSetName": "CALLSET0",
/// "genotype": [
/// 1,
/// 1
/// ],
/// }
/// ]
/// }
///
/// This may be the desired outcome, but it is up to the user to determine if
/// if that is indeed the case.
///
/// A builder for the *merge* method supported by a *variant* resource.
/// It is not used directly, but through a `VariantMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::MergeVariantsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = MergeVariantsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variants().merge(req)
/// .doit();
/// # }
/// ```
pub struct VariantMergeCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: MergeVariantsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantMergeCall<'a, C, A> {}
impl<'a, C, A> VariantMergeCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Empty)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variants.merge",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variants:merge";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: MergeVariantsRequest) -> VariantMergeCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantMergeCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantMergeCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantMergeCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Creates a new variant.
///
/// A builder for the *create* method supported by a *variant* resource.
/// It is not used directly, but through a `VariantMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::Variant;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = Variant::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variants().create(req)
/// .doit();
/// # }
/// ```
pub struct VariantCreateCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: Variant,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantCreateCall<'a, C, A> {}
impl<'a, C, A> VariantCreateCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Variant)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variants.create",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variants";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: Variant) -> VariantCreateCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantCreateCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantCreateCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantCreateCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Creates variant data by asynchronously importing the provided information.
///
/// The variants for import will be merged with any existing variant that
/// matches its reference sequence, start, end, reference bases, and
/// alternative bases. If no such variant exists, a new one will be created.
///
/// When variants are merged, the call information from the new variant
/// is added to the existing variant, and Variant info fields are merged
/// as specified in
/// infoMergeConfig.
/// As a special case, for single-sample VCF files, QUAL and FILTER fields will
/// be moved to the call level; these are sometimes interpreted in a
/// call-specific context.
/// Imported VCF headers are appended to the metadata already in a variant set.
///
/// A builder for the *import* method supported by a *variant* resource.
/// It is not used directly, but through a `VariantMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::ImportVariantsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = ImportVariantsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variants().import(req)
/// .doit();
/// # }
/// ```
pub struct VariantImportCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: ImportVariantsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantImportCall<'a, C, A> {}
impl<'a, C, A> VariantImportCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Operation)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variants.import",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variants:import";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: ImportVariantsRequest) -> VariantImportCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantImportCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantImportCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantImportCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Updates a variant.
///
/// This method supports patch semantics. Returns the modified variant without
/// its calls.
///
/// A builder for the *patch* method supported by a *variant* resource.
/// It is not used directly, but through a `VariantMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::Variant;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = Variant::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variants().patch(req, "variantId")
/// .update_mask("et")
/// .doit();
/// # }
/// ```
pub struct VariantPatchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: Variant,
_variant_id: String,
_update_mask: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantPatchCall<'a, C, A> {}
impl<'a, C, A> VariantPatchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Variant)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variants.patch",
http_method: hyper::method::Method::Patch });
let mut params: Vec<(&str, String)> = Vec::with_capacity(5 + self._additional_params.len());
params.push(("variantId", self._variant_id.to_string()));
if let Some(value) = self._update_mask {
params.push(("updateMask", value.to_string()));
}
for &field in ["alt", "variantId", "updateMask"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variants/{variantId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{variantId}", "variantId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["variantId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Patch, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: Variant) -> VariantPatchCall<'a, C, A> {
self._request = new_value;
self
}
/// The ID of the variant to be updated.
///
/// Sets the *variant id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn variant_id(mut self, new_value: &str) -> VariantPatchCall<'a, C, A> {
self._variant_id = new_value.to_string();
self
}
/// An optional mask specifying which fields to update. At this time, mutable
/// fields are names and
/// info. Acceptable values are "names" and
/// "info". If unspecified, all mutable fields will be updated.
///
/// Sets the *update mask* query property to the given value.
pub fn update_mask(mut self, new_value: &str) -> VariantPatchCall<'a, C, A> {
self._update_mask = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantPatchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantPatchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantPatchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Updates an annotation. Caller must have
/// WRITE permission for the associated dataset.
///
/// A builder for the *update* method supported by a *annotation* resource.
/// It is not used directly, but through a `AnnotationMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::Annotation;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = Annotation::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotations().update(req, "annotationId")
/// .update_mask("et")
/// .doit();
/// # }
/// ```
pub struct AnnotationUpdateCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: Annotation,
_annotation_id: String,
_update_mask: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationUpdateCall<'a, C, A> {}
impl<'a, C, A> AnnotationUpdateCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Annotation)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotations.update",
http_method: hyper::method::Method::Put });
let mut params: Vec<(&str, String)> = Vec::with_capacity(5 + self._additional_params.len());
params.push(("annotationId", self._annotation_id.to_string()));
if let Some(value) = self._update_mask {
params.push(("updateMask", value.to_string()));
}
for &field in ["alt", "annotationId", "updateMask"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotations/{annotationId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{annotationId}", "annotationId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["annotationId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Put, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: Annotation) -> AnnotationUpdateCall<'a, C, A> {
self._request = new_value;
self
}
/// The ID of the annotation to be updated.
///
/// Sets the *annotation id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn annotation_id(mut self, new_value: &str) -> AnnotationUpdateCall<'a, C, A> {
self._annotation_id = new_value.to_string();
self
}
/// An optional mask specifying which fields to update. Mutable fields are
/// name,
/// variant,
/// transcript, and
/// info. If unspecified, all mutable
/// fields will be updated.
///
/// Sets the *update mask* query property to the given value.
pub fn update_mask(mut self, new_value: &str) -> AnnotationUpdateCall<'a, C, A> {
self._update_mask = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationUpdateCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationUpdateCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationUpdateCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets an annotation. Caller must have READ permission
/// for the associated annotation set.
///
/// A builder for the *get* method supported by a *annotation* resource.
/// It is not used directly, but through a `AnnotationMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotations().get("annotationId")
/// .doit();
/// # }
/// ```
pub struct AnnotationGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_annotation_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationGetCall<'a, C, A> {}
impl<'a, C, A> AnnotationGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Annotation)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotations.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("annotationId", self._annotation_id.to_string()));
for &field in ["alt", "annotationId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotations/{annotationId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{annotationId}", "annotationId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["annotationId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the annotation to be retrieved.
///
/// Sets the *annotation id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn annotation_id(mut self, new_value: &str) -> AnnotationGetCall<'a, C, A> {
self._annotation_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Searches for annotations that match the given criteria. Results are
/// ordered by genomic coordinate (by reference sequence, then position).
/// Annotations with equivalent genomic coordinates are returned in an
/// unspecified order. This order is consistent, such that two queries for the
/// same content (regardless of page size) yield annotations in the same order
/// across their respective streams of paginated responses. Caller must have
/// READ permission for the queried annotation sets.
///
/// A builder for the *search* method supported by a *annotation* resource.
/// It is not used directly, but through a `AnnotationMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SearchAnnotationsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SearchAnnotationsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotations().search(req)
/// .doit();
/// # }
/// ```
pub struct AnnotationSearchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SearchAnnotationsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationSearchCall<'a, C, A> {}
impl<'a, C, A> AnnotationSearchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, SearchAnnotationsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotations.search",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotations/search";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SearchAnnotationsRequest) -> AnnotationSearchCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationSearchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationSearchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationSearchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Deletes an annotation. Caller must have WRITE permission for
/// the associated annotation set.
///
/// A builder for the *delete* method supported by a *annotation* resource.
/// It is not used directly, but through a `AnnotationMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotations().delete("annotationId")
/// .doit();
/// # }
/// ```
pub struct AnnotationDeleteCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_annotation_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationDeleteCall<'a, C, A> {}
impl<'a, C, A> AnnotationDeleteCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Empty)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotations.delete",
http_method: hyper::method::Method::Delete });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("annotationId", self._annotation_id.to_string()));
for &field in ["alt", "annotationId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotations/{annotationId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{annotationId}", "annotationId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["annotationId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Delete, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the annotation to be deleted.
///
/// Sets the *annotation id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn annotation_id(mut self, new_value: &str) -> AnnotationDeleteCall<'a, C, A> {
self._annotation_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationDeleteCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationDeleteCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationDeleteCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Creates a new annotation. Caller must have WRITE permission
/// for the associated annotation set.
///
/// The following fields are required:
///
/// * annotationSetId
/// * referenceName or
/// referenceId
///
/// ### Transcripts
///
/// For annotations of type TRANSCRIPT, the following fields of
/// transcript must be provided:
///
/// * exons.start
/// * exons.end
///
/// All other fields may be optionally specified, unless documented as being
/// server-generated (for example, the `id` field). The annotated
/// range must be no longer than 100Mbp (mega base pairs). See the
/// Annotation resource
/// for additional restrictions on each field.
///
/// A builder for the *create* method supported by a *annotation* resource.
/// It is not used directly, but through a `AnnotationMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::Annotation;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = Annotation::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotations().create(req)
/// .doit();
/// # }
/// ```
pub struct AnnotationCreateCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: Annotation,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationCreateCall<'a, C, A> {}
impl<'a, C, A> AnnotationCreateCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Annotation)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotations.create",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotations";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: Annotation) -> AnnotationCreateCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationCreateCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationCreateCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationCreateCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Creates one or more new annotations atomically. All annotations must
/// belong to the same annotation set. Caller must have WRITE
/// permission for this annotation set. For optimal performance, batch
/// positionally adjacent annotations together.
///
/// If the request has a systemic issue, such as an attempt to write to
/// an inaccessible annotation set, the entire RPC will fail accordingly. For
/// lesser data issues, when possible an error will be isolated to the
/// corresponding batch entry in the response; the remaining well formed
/// annotations will be created normally.
///
/// For details on the requirements for each individual annotation resource,
/// see
/// CreateAnnotation.
///
/// A builder for the *batchCreate* method supported by a *annotation* resource.
/// It is not used directly, but through a `AnnotationMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::BatchCreateAnnotationsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = BatchCreateAnnotationsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotations().batch_create(req)
/// .doit();
/// # }
/// ```
pub struct AnnotationBatchCreateCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: BatchCreateAnnotationsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationBatchCreateCall<'a, C, A> {}
impl<'a, C, A> AnnotationBatchCreateCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, BatchCreateAnnotationsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotations.batchCreate",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotations:batchCreate";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: BatchCreateAnnotationsRequest) -> AnnotationBatchCreateCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationBatchCreateCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationBatchCreateCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationBatchCreateCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Updates an annotation set. The update must respect all mutability
/// restrictions and other invariants described on the annotation set resource.
/// Caller must have WRITE permission for the associated dataset.
///
/// A builder for the *update* method supported by a *annotationset* resource.
/// It is not used directly, but through a `AnnotationsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::AnnotationSet;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = AnnotationSet::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotationsets().update(req, "annotationSetId")
/// .update_mask("amet")
/// .doit();
/// # }
/// ```
pub struct AnnotationsetUpdateCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: AnnotationSet,
_annotation_set_id: String,
_update_mask: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationsetUpdateCall<'a, C, A> {}
impl<'a, C, A> AnnotationsetUpdateCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, AnnotationSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotationsets.update",
http_method: hyper::method::Method::Put });
let mut params: Vec<(&str, String)> = Vec::with_capacity(5 + self._additional_params.len());
params.push(("annotationSetId", self._annotation_set_id.to_string()));
if let Some(value) = self._update_mask {
params.push(("updateMask", value.to_string()));
}
for &field in ["alt", "annotationSetId", "updateMask"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotationsets/{annotationSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{annotationSetId}", "annotationSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["annotationSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Put, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: AnnotationSet) -> AnnotationsetUpdateCall<'a, C, A> {
self._request = new_value;
self
}
/// The ID of the annotation set to be updated.
///
/// Sets the *annotation set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn annotation_set_id(mut self, new_value: &str) -> AnnotationsetUpdateCall<'a, C, A> {
self._annotation_set_id = new_value.to_string();
self
}
/// An optional mask specifying which fields to update. Mutable fields are
/// name,
/// source_uri, and
/// info. If unspecified, all
/// mutable fields will be updated.
///
/// Sets the *update mask* query property to the given value.
pub fn update_mask(mut self, new_value: &str) -> AnnotationsetUpdateCall<'a, C, A> {
self._update_mask = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationsetUpdateCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationsetUpdateCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationsetUpdateCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Searches for annotation sets that match the given criteria. Annotation sets
/// are returned in an unspecified order. This order is consistent, such that
/// two queries for the same content (regardless of page size) yield annotation
/// sets in the same order across their respective streams of paginated
/// responses. Caller must have READ permission for the queried datasets.
///
/// A builder for the *search* method supported by a *annotationset* resource.
/// It is not used directly, but through a `AnnotationsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SearchAnnotationSetsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SearchAnnotationSetsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotationsets().search(req)
/// .doit();
/// # }
/// ```
pub struct AnnotationsetSearchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SearchAnnotationSetsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationsetSearchCall<'a, C, A> {}
impl<'a, C, A> AnnotationsetSearchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, SearchAnnotationSetsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotationsets.search",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotationsets/search";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SearchAnnotationSetsRequest) -> AnnotationsetSearchCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationsetSearchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationsetSearchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationsetSearchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Creates a new annotation set. Caller must have WRITE permission for the
/// associated dataset.
///
/// The following fields are required:
///
/// * datasetId
/// * referenceSetId
///
/// All other fields may be optionally specified, unless documented as being
/// server-generated (for example, the `id` field).
///
/// A builder for the *create* method supported by a *annotationset* resource.
/// It is not used directly, but through a `AnnotationsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::AnnotationSet;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = AnnotationSet::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotationsets().create(req)
/// .doit();
/// # }
/// ```
pub struct AnnotationsetCreateCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: AnnotationSet,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationsetCreateCall<'a, C, A> {}
impl<'a, C, A> AnnotationsetCreateCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, AnnotationSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotationsets.create",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotationsets";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: AnnotationSet) -> AnnotationsetCreateCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationsetCreateCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationsetCreateCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationsetCreateCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Deletes an annotation set. Caller must have WRITE permission
/// for the associated annotation set.
///
/// A builder for the *delete* method supported by a *annotationset* resource.
/// It is not used directly, but through a `AnnotationsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotationsets().delete("annotationSetId")
/// .doit();
/// # }
/// ```
pub struct AnnotationsetDeleteCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_annotation_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationsetDeleteCall<'a, C, A> {}
impl<'a, C, A> AnnotationsetDeleteCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Empty)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotationsets.delete",
http_method: hyper::method::Method::Delete });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("annotationSetId", self._annotation_set_id.to_string()));
for &field in ["alt", "annotationSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotationsets/{annotationSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{annotationSetId}", "annotationSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["annotationSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Delete, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the annotation set to be deleted.
///
/// Sets the *annotation set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn annotation_set_id(mut self, new_value: &str) -> AnnotationsetDeleteCall<'a, C, A> {
self._annotation_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationsetDeleteCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationsetDeleteCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationsetDeleteCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets an annotation set. Caller must have READ permission for
/// the associated dataset.
///
/// A builder for the *get* method supported by a *annotationset* resource.
/// It is not used directly, but through a `AnnotationsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.annotationsets().get("annotationSetId")
/// .doit();
/// # }
/// ```
pub struct AnnotationsetGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_annotation_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for AnnotationsetGetCall<'a, C, A> {}
impl<'a, C, A> AnnotationsetGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, AnnotationSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.annotationsets.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("annotationSetId", self._annotation_set_id.to_string()));
for &field in ["alt", "annotationSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/annotationsets/{annotationSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{annotationSetId}", "annotationSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["annotationSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the annotation set to be retrieved.
///
/// Sets the *annotation set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn annotation_set_id(mut self, new_value: &str) -> AnnotationsetGetCall<'a, C, A> {
self._annotation_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> AnnotationsetGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> AnnotationsetGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> AnnotationsetGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Creates a new variant set.
///
/// The provided variant set must have a valid `datasetId` set - all other
/// fields are optional. Note that the `id` field will be ignored, as this is
/// assigned by the server.
///
/// A builder for the *create* method supported by a *variantset* resource.
/// It is not used directly, but through a `VariantsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::VariantSet;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = VariantSet::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variantsets().create(req)
/// .doit();
/// # }
/// ```
pub struct VariantsetCreateCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: VariantSet,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantsetCreateCall<'a, C, A> {}
impl<'a, C, A> VariantsetCreateCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, VariantSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variantsets.create",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variantsets";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: VariantSet) -> VariantsetCreateCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantsetCreateCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantsetCreateCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantsetCreateCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Deletes a variant set including all variants, call sets, and calls within.
/// This is not reversible.
///
/// A builder for the *delete* method supported by a *variantset* resource.
/// It is not used directly, but through a `VariantsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variantsets().delete("variantSetId")
/// .doit();
/// # }
/// ```
pub struct VariantsetDeleteCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_variant_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantsetDeleteCall<'a, C, A> {}
impl<'a, C, A> VariantsetDeleteCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Empty)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variantsets.delete",
http_method: hyper::method::Method::Delete });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("variantSetId", self._variant_set_id.to_string()));
for &field in ["alt", "variantSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variantsets/{variantSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{variantSetId}", "variantSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["variantSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Delete, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// The ID of the variant set to be deleted.
///
/// Sets the *variant set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn variant_set_id(mut self, new_value: &str) -> VariantsetDeleteCall<'a, C, A> {
self._variant_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantsetDeleteCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantsetDeleteCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantsetDeleteCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Exports variant set data to an external destination.
///
/// A builder for the *export* method supported by a *variantset* resource.
/// It is not used directly, but through a `VariantsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::ExportVariantSetRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = ExportVariantSetRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variantsets().export(req, "variantSetId")
/// .doit();
/// # }
/// ```
pub struct VariantsetExportCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: ExportVariantSetRequest,
_variant_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantsetExportCall<'a, C, A> {}
impl<'a, C, A> VariantsetExportCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, Operation)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variantsets.export",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(4 + self._additional_params.len());
params.push(("variantSetId", self._variant_set_id.to_string()));
for &field in ["alt", "variantSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variantsets/{variantSetId}:export";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Bigquery.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{variantSetId}", "variantSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["variantSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: ExportVariantSetRequest) -> VariantsetExportCall<'a, C, A> {
self._request = new_value;
self
}
/// Required. The ID of the variant set that contains variant data which
/// should be exported. The caller must have READ access to this variant set.
///
/// Sets the *variant set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn variant_set_id(mut self, new_value: &str) -> VariantsetExportCall<'a, C, A> {
self._variant_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantsetExportCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantsetExportCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Bigquery`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantsetExportCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Updates a variant set using patch semantics.
///
/// A builder for the *patch* method supported by a *variantset* resource.
/// It is not used directly, but through a `VariantsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::VariantSet;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = VariantSet::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variantsets().patch(req, "variantSetId")
/// .update_mask("dolor")
/// .doit();
/// # }
/// ```
pub struct VariantsetPatchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: VariantSet,
_variant_set_id: String,
_update_mask: Option<String>,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantsetPatchCall<'a, C, A> {}
impl<'a, C, A> VariantsetPatchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, VariantSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variantsets.patch",
http_method: hyper::method::Method::Patch });
let mut params: Vec<(&str, String)> = Vec::with_capacity(5 + self._additional_params.len());
params.push(("variantSetId", self._variant_set_id.to_string()));
if let Some(value) = self._update_mask {
params.push(("updateMask", value.to_string()));
}
for &field in ["alt", "variantSetId", "updateMask"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variantsets/{variantSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{variantSetId}", "variantSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["variantSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Patch, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: VariantSet) -> VariantsetPatchCall<'a, C, A> {
self._request = new_value;
self
}
/// The ID of the variant to be updated (must already exist).
///
/// Sets the *variant set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn variant_set_id(mut self, new_value: &str) -> VariantsetPatchCall<'a, C, A> {
self._variant_set_id = new_value.to_string();
self
}
/// An optional mask specifying which fields to update. Supported fields:
///
/// * metadata.
/// * name.
/// * description.
///
/// Leaving `updateMask` unset is equivalent to specifying all mutable
/// fields.
///
/// Sets the *update mask* query property to the given value.
pub fn update_mask(mut self, new_value: &str) -> VariantsetPatchCall<'a, C, A> {
self._update_mask = Some(new_value.to_string());
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantsetPatchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantsetPatchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantsetPatchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Returns a list of all variant sets matching search criteria.
///
/// Implements
/// [GlobalAllianceApi.searchVariantSets](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/variantmethods.avdl#L49).
///
/// A builder for the *search* method supported by a *variantset* resource.
/// It is not used directly, but through a `VariantsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// use genomics1::SearchVariantSetsRequest;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // As the method needs a request, you would usually fill it with the desired information
/// // into the respective structure. Some of the parts shown here might not be applicable !
/// // Values shown here are possibly random and not representative !
/// let mut req = SearchVariantSetsRequest::default();
///
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variantsets().search(req)
/// .doit();
/// # }
/// ```
pub struct VariantsetSearchCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_request: SearchVariantSetsRequest,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantsetSearchCall<'a, C, A> {}
impl<'a, C, A> VariantsetSearchCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, SearchVariantSetsResponse)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variantsets.search",
http_method: hyper::method::Method::Post });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
for &field in ["alt"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variantsets/search";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::CloudPlatform.as_ref().to_string(), ());
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
let mut json_mime_type = mime::Mime(mime::TopLevel::Application, mime::SubLevel::Json, Default::default());
let mut request_value_reader =
{
let mut value = json::value::to_value(&self._request).expect("serde to work");
remove_json_null_values(&mut value);
let mut dst = io::Cursor::new(Vec::with_capacity(128));
json::to_writer(&mut dst, &value).unwrap();
dst
};
let request_size = request_value_reader.seek(io::SeekFrom::End(0)).unwrap();
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
request_value_reader.seek(io::SeekFrom::Start(0)).unwrap();
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Post, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone())
.header(ContentType(json_mime_type.clone()))
.header(ContentLength(request_size as u64))
.body(&mut request_value_reader);
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
///
/// Sets the *request* property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn request(mut self, new_value: SearchVariantSetsRequest) -> VariantsetSearchCall<'a, C, A> {
self._request = new_value;
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantsetSearchCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantsetSearchCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::CloudPlatform`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantsetSearchCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
/// Gets a variant set by ID.
///
/// A builder for the *get* method supported by a *variantset* resource.
/// It is not used directly, but through a `VariantsetMethods` instance.
///
/// # Example
///
/// Instantiate a resource method builder
///
/// ```test_harness,no_run
/// # extern crate hyper;
/// # extern crate hyper_rustls;
/// # extern crate yup_oauth2 as oauth2;
/// # extern crate google_genomics1 as genomics1;
/// # #[test] fn egal() {
/// # use std::default::Default;
/// # use oauth2::{Authenticator, DefaultAuthenticatorDelegate, ApplicationSecret, MemoryStorage};
/// # use genomics1::Genomics;
///
/// # let secret: ApplicationSecret = Default::default();
/// # let auth = Authenticator::new(&secret, DefaultAuthenticatorDelegate,
/// # hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())),
/// # <MemoryStorage as Default>::default(), None);
/// # let mut hub = Genomics::new(hyper::Client::with_connector(hyper::net::HttpsConnector::new(hyper_rustls::TlsClient::new())), auth);
/// // You can configure optional parameters by calling the respective setters at will, and
/// // execute the final call using `doit()`.
/// // Values shown here are possibly random and not representative !
/// let result = hub.variantsets().get("variantSetId")
/// .doit();
/// # }
/// ```
pub struct VariantsetGetCall<'a, C, A>
where C: 'a, A: 'a {
hub: &'a Genomics<C, A>,
_variant_set_id: String,
_delegate: Option<&'a mut Delegate>,
_additional_params: HashMap<String, String>,
_scopes: BTreeMap<String, ()>
}
impl<'a, C, A> CallBuilder for VariantsetGetCall<'a, C, A> {}
impl<'a, C, A> VariantsetGetCall<'a, C, A> where C: BorrowMut<hyper::Client>, A: oauth2::GetToken {
/// Perform the operation you have build so far.
pub fn doit(mut self) -> Result<(hyper::client::Response, VariantSet)> {
use std::io::{Read, Seek};
use hyper::header::{ContentType, ContentLength, Authorization, Bearer, UserAgent, Location};
let mut dd = DefaultDelegate;
let mut dlg: &mut Delegate = match self._delegate {
Some(d) => d,
None => &mut dd
};
dlg.begin(MethodInfo { id: "genomics.variantsets.get",
http_method: hyper::method::Method::Get });
let mut params: Vec<(&str, String)> = Vec::with_capacity(3 + self._additional_params.len());
params.push(("variantSetId", self._variant_set_id.to_string()));
for &field in ["alt", "variantSetId"].iter() {
if self._additional_params.contains_key(field) {
dlg.finished(false);
return Err(Error::FieldClash(field));
}
}
for (name, value) in self._additional_params.iter() {
params.push((&name, value.clone()));
}
params.push(("alt", "json".to_string()));
let mut url = self.hub._base_url.clone() + "v1/variantsets/{variantSetId}";
if self._scopes.len() == 0 {
self._scopes.insert(Scope::Readonly.as_ref().to_string(), ());
}
for &(find_this, param_name) in [("{variantSetId}", "variantSetId")].iter() {
let mut replace_with: Option<&str> = None;
for &(name, ref value) in params.iter() {
if name == param_name {
replace_with = Some(value);
break;
}
}
url = url.replace(find_this, replace_with.expect("to find substitution value in params"));
}
{
let mut indices_for_removal: Vec<usize> = Vec::with_capacity(1);
for param_name in ["variantSetId"].iter() {
if let Some(index) = params.iter().position(|t| &t.0 == param_name) {
indices_for_removal.push(index);
}
}
for &index in indices_for_removal.iter() {
params.remove(index);
}
}
if params.len() > 0 {
url.push('?');
url.push_str(&url::form_urlencoded::serialize(params));
}
loop {
let token = match self.hub.auth.borrow_mut().token(self._scopes.keys()) {
Ok(token) => token,
Err(err) => {
match dlg.token(&*err) {
Some(token) => token,
None => {
dlg.finished(false);
return Err(Error::MissingToken(err))
}
}
}
};
let auth_header = Authorization(Bearer { token: token.access_token });
let mut req_result = {
let mut client = &mut *self.hub.client.borrow_mut();
let mut req = client.borrow_mut().request(hyper::method::Method::Get, &url)
.header(UserAgent(self.hub._user_agent.clone()))
.header(auth_header.clone());
dlg.pre_request();
req.send()
};
match req_result {
Err(err) => {
if let oauth2::Retry::After(d) = dlg.http_error(&err) {
sleep(d);
continue;
}
dlg.finished(false);
return Err(Error::HttpError(err))
}
Ok(mut res) => {
if !res.status.is_success() {
let mut json_err = String::new();
res.read_to_string(&mut json_err).unwrap();
if let oauth2::Retry::After(d) = dlg.http_failure(&res,
json::from_str(&json_err).ok(),
json::from_str(&json_err).ok()) {
sleep(d);
continue;
}
dlg.finished(false);
return match json::from_str::<ErrorResponse>(&json_err){
Err(_) => Err(Error::Failure(res)),
Ok(serr) => Err(Error::BadRequest(serr))
}
}
let result_value = {
let mut json_response = String::new();
res.read_to_string(&mut json_response).unwrap();
match json::from_str(&json_response) {
Ok(decoded) => (res, decoded),
Err(err) => {
dlg.response_json_decode_error(&json_response, &err);
return Err(Error::JsonDecodeError(json_response, err));
}
}
};
dlg.finished(true);
return Ok(result_value)
}
}
}
}
/// Required. The ID of the variant set.
///
/// Sets the *variant set id* path property to the given value.
///
/// Even though the property as already been set when instantiating this call,
/// we provide this method for API completeness.
pub fn variant_set_id(mut self, new_value: &str) -> VariantsetGetCall<'a, C, A> {
self._variant_set_id = new_value.to_string();
self
}
/// The delegate implementation is consulted whenever there is an intermediate result, or if something goes wrong
/// while executing the actual API request.
///
/// It should be used to handle progress information, and to implement a certain level of resilience.
///
/// Sets the *delegate* property to the given value.
pub fn delegate(mut self, new_value: &'a mut Delegate) -> VariantsetGetCall<'a, C, A> {
self._delegate = Some(new_value);
self
}
/// Set any additional parameter of the query string used in the request.
/// It should be used to set parameters which are not yet available through their own
/// setters.
///
/// Please note that this method must not be used to set any of the known paramters
/// which have their own setter method. If done anyway, the request will fail.
///
/// # Additional Parameters
///
/// * *upload_protocol* (query-string) - Upload protocol for media (e.g. "raw", "multipart").
/// * *prettyPrint* (query-boolean) - Returns response with indentations and line breaks.
/// * *access_token* (query-string) - OAuth access token.
/// * *uploadType* (query-string) - Legacy upload protocol for media (e.g. "media", "multipart").
/// * *quotaUser* (query-string) - Available to use for quota purposes for server-side applications. Can be any arbitrary string assigned to a user, but should not exceed 40 characters.
/// * *callback* (query-string) - JSONP
/// * *oauth_token* (query-string) - OAuth 2.0 token for the current user.
/// * *key* (query-string) - API key. Your API key identifies your project and provides you with API access, quota, and reports. Required unless you provide an OAuth 2.0 token.
/// * *fields* (query-string) - Selector specifying which fields to include in a partial response.
/// * *alt* (query-string) - Data format for response.
/// * *$.xgafv* (query-string) - V1 error format.
pub fn param<T>(mut self, name: T, value: T) -> VariantsetGetCall<'a, C, A>
where T: AsRef<str> {
self._additional_params.insert(name.as_ref().to_string(), value.as_ref().to_string());
self
}
/// Identifies the authorization scope for the method you are building.
///
/// Use this method to actively specify which scope should be used, instead the default `Scope` variant
/// `Scope::Readonly`.
///
/// The `scope` will be added to a set of scopes. This is important as one can maintain access
/// tokens for more than one scope.
/// If `None` is specified, then all scopes will be removed and no default scope will be used either.
/// In that case, you have to specify your API-key using the `key` parameter (see the `param()`
/// function for details).
///
/// Usually there is more than one suitable scope to authorize an operation, some of which may
/// encompass more rights than others. For example, for listing resources, a *read-only* scope will be
/// sufficient, a read-write scope will do as well.
pub fn add_scope<T, S>(mut self, scope: T) -> VariantsetGetCall<'a, C, A>
where T: Into<Option<S>>,
S: AsRef<str> {
match scope.into() {
Some(scope) => self._scopes.insert(scope.as_ref().to_string(), ()),
None => None,
};
self
}
}
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